HIVE-Hexagon: High-Performance, Parallelized Sequence Alignment for Next-Generation Sequencing Data Analysis

por Santana-Quintero, Luis, Dingerdissen, Hayley, Thierry-Mieg, Jean, Mazumder, Raja, Simonyan, Vahan
Publicado 2014

A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs

por Dingerdissen, Hayley, Weaver, Daniel S, Karp, Peter D, Pan, Yang, Simonyan, Vahan, Mazumder, Raja
Publicado 2014

BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery

por Dingerdissen, Hayley M, Torcivia-Rodriguez, John, Hu, Yu, Chang, Ting-Chia, Mazumder, Raja, Kahsay, Robel
Publicado 2018

Loss and gain of N-linked glycosylation sequons due to single-nucleotide variation in cancer

por Fan, Yu, Hu, Yu, Yan, Cheng, Goldman, Radoslav, Pan, Yang, Mazumder, Raja, Dingerdissen, Hayley M.
Publicado 2018

Human germline and pan-cancer variomes and their distinct functional profiles

por Pan, Yang, Karagiannis, Konstantinos, Zhang, Haichen, Dingerdissen, Hayley, Shamsaddini, Amirhossein, Wan, Quan, Simonyan, Vahan, Mazumder, Raja
Publicado 2014

DEXTER: Disease-Expression Relation Extraction from Text

por Gupta, Samir, Dingerdissen, Hayley, Ross, Karen E, Hu, Yu, Wu, Cathy H, Mazumder, Raja, Vijay-Shanker, K
Publicado 2018

BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis

por Wan, Quan, Dingerdissen, Hayley, Fan, Yu, Gulzar, Naila, Pan, Yang, Wu, Tsung-Jung, Yan, Cheng, Zhang, Haichen, Mazumder, Raja
Publicado 2015

OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data

por Dingerdissen, Hayley M., Bastian, Frederic, Vijay-Shanker, K., Robinson-Rechavi, Marc, Bell, Amanda, Gogate, Nikhita, Gupta, Samir, Holmes, Evan, Kahsay, Robel, Keeney, Jonathon, Kincaid, Heather, King, Charles Hadley, Liu, David, Crichton, Daniel J., Mazumder, Raja
Publicado 2020

High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis

por Simonyan, Vahan, Chumakov, Konstantin, Dingerdissen, Hayley, Faison, William, Goldweber, Scott, Golikov, Anton, Gulzar, Naila, Karagiannis, Konstantinos, Vinh Nguyen Lam, Phuc, Maudru, Thomas, Muravitskaja, Olesja, Osipova, Ekaterina, Pan, Yang, Pschenichnov, Alexey, Rostovtsev, Alexandre, Santana-Quintero, Luis, Smith, Krista, Thompson, Elaine E., Tkachenko, Valery, Torcivia-Rodriguez, John, Voskanian, Alin, Wan, Quan, Wang, Jing, Wu, Tsung-Jung, Wilson, Carolyn, Mazumder, Raja
Publicado 2016