CrossDome: an interactive R package to predict cross-reactivity risk using immunopeptidomics databases

por Fonseca, Andre F., Antunes, Dinler A.
Publicado 2023

Revealing Unknown Protein Structures Using Computational Conformational Sampling Guided by Experimental Hydrogen-Exchange Data

por Devaurs, Didier, Antunes, Dinler A., Kavraki, Lydia E.
Publicado 2018

Computational analysis of complement inhibitor compstatin using molecular dynamics

por Devaurs, Didier, Antunes, Dinler A., Kavraki, Lydia E.
Publicado 2020

Editorial: Structural modeling and computational analyses of immune system molecules

por Antunes, Dinler A., Schoeder, Clara T., Baek, Minkyung, Donadi, Eduardo A.
Publicado 2023

Effects of candiduria-candidemia infections on mortality and morbidity in the ICU and the risk factors of these infections

por Adanir, T, Sencan, A, Dereli, Y, Dinler, A, Aran, G, Karahan, N
Publicado 2006

Assessing the poisoning cases being monitored in the ICU in terms of causes and mortality

por Sencan, A, Adanir, T, Dinler, A, Dereli, Y, Aran, G, Karahan, N
Publicado 2006

APE-Gen: A Fast Method for Generating Ensembles of Bound Peptide-MHC Conformations

por Abella, Jayvee R., Antunes, Dinler A., Clementi, Cecilia, Kavraki, Lydia E.
Publicado 2019

Large-Scale Structure-Based Prediction of Stable Peptide Binding to Class I HLAs Using Random Forests

por Abella, Jayvee R., Antunes, Dinler A., Clementi, Cecilia, Kavraki, Lydia E.
Publicado 2020

General Prediction of Peptide-MHC Binding Modes Using Incremental Docking: A Proof of Concept

por Antunes, Dinler A., Devaurs, Didier, Moll, Mark, Lizée, Gregory, Kavraki, Lydia E.
Publicado 2018

Editorial: Advances in mathematical and computational oncology, volume III

por Bebis, George, Kato, Mamoru, Kohandel, Mohammad, Wilkie, Kathleen, Antunes, Dinler A., Chen, Ken, Dou, Jinzhuang
Publicado 2023

PepSim: T-cell cross-reactivity prediction via comparison of peptide sequence and peptide-HLA structure

por Hall-Swan, Sarah, Slone, Jared, Rigo, Mauricio M., Antunes, Dinler A., Lizée, Gregory, Kavraki, Lydia E.
Publicado 2023

DINC-COVID: A webserver for ensemble docking with flexible SARS-CoV-2 proteins

por Hall-Swan, Sarah, Devaurs, Didier, Rigo, Mauricio M., Antunes, Dinler A., Kavraki, Lydia E., Zanatta, Geancarlo
Publicado 2021

Individual Epitope-Specific CD8(+) T Cell Immune Responses Are Shaped Differently during Chronic Viral Infection

por Klein, Sebastian, Mischke, Jasmin, Beruldsen, Finn, Prinz, Immo, Antunes, Dinler A., Cornberg, Markus, Kraft, Anke R. M.
Publicado 2023

Coarse-Grained Conformational Sampling of Protein Structure Improves the Fit to Experimental Hydrogen-Exchange Data

por Devaurs, Didier, Antunes, Dinler A., Papanastasiou, Malvina, Moll, Mark, Ricklin, Daniel, Lambris, John D., Kavraki, Lydia E.
Publicado 2017

Using parallelized incremental meta-docking can solve the conformational sampling issue when docking large ligands to proteins

por Devaurs, Didier, Antunes, Dinler A, Hall-Swan, Sarah, Mitchell, Nicole, Moll, Mark, Lizée, Gregory, Kavraki, Lydia E
Publicado 2019

Structural Allele-Specific Patterns Adopted by Epitopes in the MHC-I Cleft and Reconstruction of MHC:peptide Complexes to Cross-Reactivity Assessment

por Antunes, Dinler A., Vieira, Gustavo F., Rigo, Maurício M., Cibulski, Samuel P., Sinigaglia, Marialva, Chies, José A. B.
Publicado 2010

Structural Modeling and Molecular Dynamics of the Immune Checkpoint Molecule HLA-G

por Arns, Thais, Antunes, Dinler A., Abella, Jayvee R., Rigo, Maurício M., Kavraki, Lydia E., Giuliatti, Silvana, Donadi, Eduardo A.
Publicado 2020

HLA-Arena: A Customizable Environment for the Structural Modeling and Analysis of Peptide-HLA Complexes for Cancer Immunotherapy

por Antunes, Dinler A., Abella, Jayvee R., Hall-Swan, Sarah, Devaurs, Didier, Conev, Anja, Moll, Mark, Lizée, Gregory, Kavraki, Lydia E.
Publicado 2020

New Insights into the In Silico Prediction of HIV Protease Resistance to Nelfinavir

por Antunes, Dinler A., Rigo, Maurício M., Sinigaglia, Marialva, de Medeiros, Rúbia M., Junqueira, Dennis M., Almeida, Sabrina E. M., Vieira, Gustavo F.
Publicado 2014

Interpreting T-Cell Cross-reactivity through Structure: Implications for TCR-Based Cancer Immunotherapy

por Antunes, Dinler A., Rigo, Maurício M., Freitas, Martiela V., Mendes, Marcus F. A., Sinigaglia, Marialva, Lizée, Gregory, Kavraki, Lydia E., Selin, Liisa K., Cornberg, Markus, Vieira, Gustavo F.
Publicado 2017