Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication

por Shinbrot, Eve, Henninger, Erin E., Weinhold, Nils, Covington, Kyle R., Göksenin, A. Yasemin, Schultz, Nikolaus, Chao, Hsu, Doddapaneni, HarshaVardhan, Muzny, Donna M., Gibbs, Richard A., Sander, Chris, Pursell, Zachary F., Wheeler, David A.
Publicado 2014

An open access pilot freely sharing cancer genomic data from participants in Texas

por Becnel, Lauren B., Pereira, Stacey, Drummond, Jennifer A., Gingras, Marie-Claude, Covington, Kyle R., Kovar, Christie L., Doddapaneni, Harsha Vardhan, Hu, Jianhong, Muzny, Donna, McGuire, Amy L., Wheeler, David A., Gibbs, Richard A.
Publicado 2016

Postmortem genetic screening for the identification, verification, and reporting of genetic variants contributing to the sudden death of the young

por Methner, D. Nicole R., Scherer, Steven E., Welch, Katherine, Walkiewicz, Magdalena, Eng, Christine M., Belmont, John W., Powell, Mark C., Korchina, Viktoriya, Doddapaneni, Harsha Vardhan, Muzny, Donna M., Gibbs, Richard A., Wolf, Dwayne A., Sanchez, Luis A., Kahn, Roger
Publicado 2016

BCOR-CCNB3 Fusions Are Frequent in Undifferentiated Sarcomas of Male Children

por Peters, Tricia L., Kumar, Vijetha, Polikepahad, Sumanth, Lin, Frank Y., Sarabia, Stephen F., Liang, Yu, Wang, Wei-Lien, Lazar, Alexander J., Doddapaneni, Harsha Vardhan, Chao, Hsu, Muzny, Donna M., Wheeler, David A., Okcu, M. Fatih, Plon, Sharon E., Hicks, M. John, López-Terrada, Dolores, Parsons, D. Williams, Roy, Angshumoy
Publicado 2014

Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda

por Eyun, Seong-il, Soh, Ho Young, Posavi, Marijan, Munro, James B., Hughes, Daniel S.T., Murali, Shwetha C., Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Dinh, Huyen, Han, Yi, Doddapaneni, HarshaVardhan, Worley, Kim C., Muzny, Donna M., Park, Eun-Ok, Silva, Joana C., Gibbs, Richard A., Richards, Stephen, Lee, Carol Eunmi
Publicado 2017

Recurrent internal tandem duplications of BCOR in clear cell sarcoma of the kidney

por Roy, Angshumoy, Kumar, Vijetha, Zorman, Barry, Fang, Erica, Haines, Katherine M., Doddapaneni, HarshaVardhan, Hampton, Oliver A., White, Simon, Bavle, Abhishek A., Patel, Nimesh R., Eldin, Karen W., John Hicks, M., Rakheja, Dinesh, Leavey, Patrick J., Skapek, Stephen X., Amatruda, James F., Nuchtern, Jed G., Chintagumpala, Murali M., Wheeler, David A., Plon, Sharon E., Sumazin, Pavel, Parsons, D. Williams
Publicado 2015

Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum

por Lindsey, Amelia R. I., Kelkar, Yogeshwar D., Wu, Xin, Sun, Dan, Martinson, Ellen O., Yan, Zhichao, Rugman-Jones, Paul F., Hughes, Daniel S. T., Murali, Shwetha C., Qu, Jiaxin, Dugan, Shannon, Lee, Sandra L., Chao, Hsu, Dinh, Huyen, Han, Yi, Doddapaneni, Harsha Vardhan, Worley, Kim C., Muzny, Donna M., Ye, Gongyin, Gibbs, Richard A., Richards, Stephen, Yi, Soojin V., Stouthamer, Richard, Werren, John H.
Publicado 2018

Temporal development of the gut microbiome in early childhood from the TEDDY study

por Stewart, Christopher J., Ajami, Nadim J., O’Brien, Jacqueline L., Hutchinson, Diane S., Smith, Daniel P., Wong, Matthew C., Ross, Matthew C., Lloyd, Richard E., Doddapaneni, HarshaVardhan, Metcalf, Ginger A., Muzny, Donna, Gibbs, Richard A., Vatanen, Tommi, Huttenhower, Curtis, Xavier, Ramnik J., Rewers, Marian, Hagopian, William, Toppari, Jorma, Ziegler, Anette-G., She, Jin-Xiong, Akolkar, Beena, Lernmark, Ake, Hyoty, Heikki, Vehik, Kendra, Krischer, Jeffrey P., Petrosino, Joseph F.
Publicado 2018

Functionally oriented analysis of cardiometabolic traits in a trans-ethnic sample

por Petty, Lauren E, Highland, Heather M, Gamazon, Eric R, Hu, Hao, Karhade, Mandar, Chen, Hung-Hsin, de Vries, Paul S, Grove, Megan L, Aguilar, David, Bell, Graeme I, Huff, Chad D, Hanis, Craig L, Doddapaneni, HarshaVardhan, Munzy, Donna M, Gibbs, Richard A, Ma, Jianzhong, Parra, Esteban J, Cruz, Miguel, Valladares-Salgado, Adan, Arking, Dan E, Barbeira, Alvaro, Im, Hae Kyung, Morrison, Alanna C, Boerwinkle, Eric, Below, Jennifer E
Publicado 2019

Rise and fall of subclones from diagnosis to relapse in pediatric B-acute lymphoblastic leukaemia

por Ma, Xiaotu, Edmonson, Michael, Yergeau, Donald, Muzny, Donna M., Hampton, Oliver A., Rusch, Michael, Song, Guangchun, Easton, John, Harvey, Richard C., Wheeler, David A., Ma, Jing, Doddapaneni, HarshaVardhan, Vadodaria, Bhavin, Wu, Gang, Nagahawatte, Panduka, Carroll, William L., Chen, I-Ming, Gastier-Foster, Julie M., Relling, Mary V., Smith, Malcolm A., Devidas, Meenakshi, Auvil, Jaime M. Guidry, Downing, James R., Loh, Mignon L., Willman, Cheryl L., Gerhard, Daniela S., Mullighan, Charles G., Hunger, Stephen P., Zhang, Jinghui
Publicado 2015

The house spider genome reveals an ancient whole-genome duplication during arachnid evolution

por Schwager, Evelyn E., Sharma, Prashant P., Clarke, Thomas, Leite, Daniel J., Wierschin, Torsten, Pechmann, Matthias, Akiyama-Oda, Yasuko, Esposito, Lauren, Bechsgaard, Jesper, Bilde, Trine, Buffry, Alexandra D., Chao, Hsu, Dinh, Huyen, Doddapaneni, HarshaVardhan, Dugan, Shannon, Eibner, Cornelius, Extavour, Cassandra G., Funch, Peter, Garb, Jessica, Gonzalez, Luis B., Gonzalez, Vanessa L., Griffiths-Jones, Sam, Han, Yi, Hayashi, Cheryl, Hilbrant, Maarten, Hughes, Daniel S. T., Janssen, Ralf, Lee, Sandra L., Maeso, Ignacio, Murali, Shwetha C., Muzny, Donna M., Nunes da Fonseca, Rodrigo, Paese, Christian L. B., Qu, Jiaxin, Ronshaugen, Matthew, Schomburg, Christoph, Schönauer, Anna, Stollewerk, Angelika, Torres-Oliva, Montserrat, Turetzek, Natascha, Vanthournout, Bram, Werren, John H., Wolff, Carsten, Worley, Kim C., Bucher, Gregor, Gibbs, Richard A., Coddington, Jonathan, Oda, Hiroki, Stanke, Mario, Ayoub, Nadia A., Prpic, Nikola-Michael, Flot, Jean-François, Posnien, Nico, Richards, Stephen, McGregor, Alistair P.
Publicado 2017

The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

por Armisén, David, Rajakumar, Rajendhran, Friedrich, Markus, Benoit, Joshua B., Robertson, Hugh M., Panfilio, Kristen A., Ahn, Seung-Joon, Poelchau, Monica F., Chao, Hsu, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Gibbs, Richard A., Hughes, Daniel S. T., Han, Yi, Lee, Sandra L., Murali, Shwetha C., Muzny, Donna M., Qu, Jiaxin, Worley, Kim C., Munoz-Torres, Monica, Abouheif, Ehab, Bonneton, François, Chen, Travis, Chiang, Li-Mei, Childers, Christopher P., Cridge, Andrew G., Crumière, Antonin J. J., Decaras, Amelie, Didion, Elise M., Duncan, Elizabeth J., Elpidina, Elena N., Favé, Marie-Julie, Finet, Cédric, Jacobs, Chris G. C., Cheatle Jarvela, Alys M., Jennings, Emily C., Jones, Jeffery W., Lesoway, Maryna P., Lovegrove, Mackenzie R., Martynov, Alexander, Oppert, Brenda, Lillico-Ouachour, Angelica, Rajakumar, Arjuna, Refki, Peter Nagui, Rosendale, Andrew J., Santos, Maria Emilia, Toubiana, William, van der Zee, Maurijn, Vargas Jentzsch, Iris M., Lowman, Aidamalia Vargas, Viala, Severine, Richards, Stephen, Khila, Abderrahman
Publicado 2018

Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest

por Sparks, Michael E., Bansal, Raman, Benoit, Joshua B., Blackburn, Michael B., Chao, Hsu, Chen, Mengyao, Cheng, Sammy, Childers, Christopher, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Elpidina, Elena N., Farrow, David W., Friedrich, Markus, Gibbs, Richard A., Hall, Brantley, Han, Yi, Hardy, Richard W., Holmes, Christopher J., Hughes, Daniel S. T., Ioannidis, Panagiotis, Cheatle Jarvela, Alys M., Johnston, J. Spencer, Jones, Jeffery W., Kronmiller, Brent A., Kung, Faith, Lee, Sandra L., Martynov, Alexander G., Masterson, Patrick, Maumus, Florian, Munoz-Torres, Monica, Murali, Shwetha C., Murphy, Terence D., Muzny, Donna M., Nelson, David R., Oppert, Brenda, Panfilio, Kristen A., Paula, Débora Pires, Pick, Leslie, Poelchau, Monica F., Qu, Jiaxin, Reding, Katie, Rhoades, Joshua H., Rhodes, Adelaide, Richards, Stephen, Richter, Rose, Robertson, Hugh M., Rosendale, Andrew J., Tu, Zhijian Jake, Velamuri, Arun S., Waterhouse, Robert M., Weirauch, Matthew T., Wells, Jackson T., Werren, John H., Worley, Kim C., Zdobnov, Evgeny M., Gundersen-Rindal, Dawn E.
Publicado 2020

The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

por Papanicolaou, Alexie, Schetelig, Marc F., Arensburger, Peter, Atkinson, Peter W., Benoit, Joshua B., Bourtzis, Kostas, Castañera, Pedro, Cavanaugh, John P., Chao, Hsu, Childers, Christopher, Curril, Ingrid, Dinh, Huyen, Doddapaneni, HarshaVardhan, Dolan, Amanda, Dugan, Shannon, Friedrich, Markus, Gasperi, Giuliano, Geib, Scott, Georgakilas, Georgios, Gibbs, Richard A., Giers, Sarah D., Gomulski, Ludvik M., González-Guzmán, Miguel, Guillem-Amat, Ana, Han, Yi, Hatzigeorgiou, Artemis G., Hernández-Crespo, Pedro, Hughes, Daniel S. T., Jones, Jeffery W., Karagkouni, Dimitra, Koskinioti, Panagiota, Lee, Sandra L., Malacrida, Anna R., Manni, Mosè, Mathiopoulos, Kostas, Meccariello, Angela, Murali, Shwetha C., Murphy, Terence D., Muzny, Donna M., Oberhofer, Georg, Ortego, Félix, Paraskevopoulou, Maria D., Poelchau, Monica, Qu, Jiaxin, Reczko, Martin, Robertson, Hugh M., Rosendale, Andrew J., Rosselot, Andrew E., Saccone, Giuseppe, Salvemini, Marco, Savini, Grazia, Schreiner, Patrick, Scolari, Francesca, Siciliano, Paolo, Sim, Sheina B., Tsiamis, George, Ureña, Enric, Vlachos, Ioannis S., Werren, John H., Wimmer, Ernst A., Worley, Kim C., Zacharopoulou, Antigone, Richards, Stephen, Handler, Alfred M.
Publicado 2016

Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive...

por Papanicolaou, Alexie, Schetelig, Marc F., Arensburger, Peter, Atkinson, Peter W., Benoit, Joshua B., Bourtzis, Kostas, Castañera, Pedro, Cavanaugh, John P., Chao, Hsu, Childers, Christopher, Curril, Ingrid, Dinh, Huyen, Doddapaneni, HarshaVardhan, Dolan, Amanda, Dugan, Shannon, Friedrich, Markus, Gasperi, Giuliano, Geib, Scott, Georgakilas, Georgios, Gibbs, Richard A., Giers, Sarah D., Gomulski, Ludvik M., González-Guzmán, Miguel, Guillem-Amat, Ana, Han, Yi, Hatzigeorgiou, Artemis G., Hernández-Crespo, Pedro, Hughes, Daniel S. T., Jones, Jeffery W., Karagkouni, Dimitra, Koskinioti, Panagiota, Lee, Sandra L., Malacrida, Anna R., Manni, Mosè, Mathiopoulos, Kostas, Meccariello, Angela, Munoz-Torres, Monica, Murali, Shwetha C., Murphy, Terence D., Muzny, Donna M., Oberhofer, Georg, Ortego, Félix, Paraskevopoulou, Maria D., Poelchau, Monica, Qu, Jiaxin, Reczko, Martin, Robertson, Hugh M., Rosendale, Andrew J., Rosselot, Andrew E., Saccone, Giuseppe, Salvemini, Marco, Savini, Grazia, Schreiner, Patrick, Scolari, Francesca, Siciliano, Paolo, Sim, Sheina B., Tsiamis, George, Ureña, Enric, S.Vlachos, Ioannis, Werren, John H., Wimmer, Ernst A., Worley, Kim C., Zacharopoulou, Antigone, Richards, Stephen, Handler, Alfred M.
Publicado 2017

Genome-enabled insights into the biology of thrips as crop pests

por Rotenberg, Dorith, Baumann, Aaron A., Ben-Mahmoud, Sulley, Christiaens, Olivier, Dermauw, Wannes, Ioannidis, Panagiotis, Jacobs, Chris G. C., Vargas Jentzsch, Iris M., Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Taning, Clauvis N. T., Wei, Dong, Widana Gamage, Shirani M. K., Hughes, Daniel S. T., Murali, Shwetha C., Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Chao, Hsu, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Qu, Jiaxin, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Park, Yoonseong, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., van der Zee, Maurijn, Van Leeuwen, Thomas, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., Richards, Stephen
Publicado 2020

Correction to: Genome-enabled insights into the biology of thrips as crop pests

por Rotenberg, Dorith, Baumann, Aaron A., Ben-Mahmoud, Sulley, Christiaens, Olivier, Dermauw, Wannes, Ioannidis, Panagiotis, Jacobs, Chris G. C., Vargas Jentzsch, Iris M., Oliver, Jonathan E., Poelchau, Monica F., Rajarapu, Swapna Priya, Schneweis, Derek J., Snoeck, Simon, Taning, Clauvis N. T., Wei, Dong, Widana Gamage, Shirani M. K., Hughes, Daniel S. T., Murali, Shwetha C., Bailey, Samuel T., Bejerman, Nicolas E., Holmes, Christopher J., Jennings, Emily C., Rosendale, Andrew J., Rosselot, Andrew, Hervey, Kaylee, Schneweis, Brandi A., Cheng, Sammy, Childers, Christopher, Simão, Felipe A., Dietzgen, Ralf G., Chao, Hsu, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dugan, Shannon, Han, Yi, Lee, Sandra L., Muzny, Donna M., Qu, Jiaxin, Worley, Kim C., Benoit, Joshua B., Friedrich, Markus, Jones, Jeffery W., Panfilio, Kristen A., Park, Yoonseong, Robertson, Hugh M., Smagghe, Guy, Ullman, Diane E., van der Zee, Maurijn, Van Leeuwen, Thomas, Veenstra, Jan A., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Whitfield, Anna E., Zdobnov, Evgeny M., Gibbs, Richard A., Richards, Stephen
Publicado 2020

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle–plant i...

por McKenna, Duane D., Scully, Erin D., Pauchet, Yannick, Hoover, Kelli, Kirsch, Roy, Geib, Scott M., Mitchell, Robert F., Waterhouse, Robert M., Ahn, Seung-Joon, Arsala, Deanna, Benoit, Joshua B., Blackmon, Heath, Bledsoe, Tiffany, Bowsher, Julia H., Busch, André, Calla, Bernarda, Chao, Hsu, Childers, Anna K., Childers, Christopher, Clarke, Dave J., Cohen, Lorna, Demuth, Jeffery P., Dinh, Huyen, Doddapaneni, HarshaVardhan, Dolan, Amanda, Duan, Jian J., Dugan, Shannon, Friedrich, Markus, Glastad, Karl M., Goodisman, Michael A. D., Haddad, Stephanie, Han, Yi, Hughes, Daniel S. T., Ioannidis, Panagiotis, Johnston, J. Spencer, Jones, Jeffery W., Kuhn, Leslie A., Lance, David R., Lee, Chien-Yueh, Lee, Sandra L., Lin, Han, Lynch, Jeremy A., Moczek, Armin P., Murali, Shwetha C., Muzny, Donna M., Nelson, David R., Palli, Subba R., Panfilio, Kristen A., Pers, Dan, Poelchau, Monica F., Quan, Honghu, Qu, Jiaxin, Ray, Ann M., Rinehart, Joseph P., Robertson, Hugh M., Roehrdanz, Richard, Rosendale, Andrew J., Shin, Seunggwan, Silva, Christian, Torson, Alex S., Jentzsch, Iris M. Vargas, Werren, John H., Worley, Kim C., Yocum, George, Zdobnov, Evgeny M., Gibbs, Richard A., Richards, Stephen
Publicado 2016

Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design

por Rokita, Jo Lynne, Rathi, Komal S., Cardenas, Maria F., Upton, Kristen A., Jayaseelan, Joy, Cross, Katherine L., Pfeil, Jacob, Egolf, Laura E., Way, Gregory P., Farrel, Alvin, Kendsersky, Nathan M., Patel, Khushbu, Gaonkar, Krutika S., Modi, Apexa, Berko, Esther R., Lopez, Gonzalo, Vaksman, Zalman, Mayoh, Chelsea, Nance, Jonas, McCoy, Kristyn, Haber, Michelle, Evans, Kathryn, McCalmont, Hannah, Bendak, Katerina, Böhm, Julia W., Marshall, Glenn M., Tyrrell, Vanessa, Kalletla, Karthik, Braun, Frank K., Qi, Lin, Du, Yunchen, Zhang, Huiyuan, Lindsay, Holly B., Zhao, Sibo, Shu, Jack, Baxter, Patricia, Morton, Christopher, Kurmashev, Dias, Zheng, Siyuan, Chen, Yidong, Bowen, Jay, Bryan, Anthony C., Leraas, Kristen M., Coppens, Sara E., Doddapaneni, HarshaVardhan, Momin, Zeineen, Zhang, Wendong, Sacks, Gregory I., Hart, Lori S., Krytska, Kateryna, Mosse, Yael P., Gatto, Gregory J., Sanchez, Yolanda, Greene, Casey S., Diskin, Sharon J., Vaske, Olena Morozova, Haussler, David, Gastier-Foster, Julie M., E. Anders, Kolb, Gorlick, Richard, Li, Xiao-Nan, Reynolds, C. Patrick, Kurmasheva, Raushan T., Houghton, Peter J., Smith, Malcolm A., Lock, Richard B., Raman, Pichai, Wheeler, David A., Maris, John M.
Publicado 2019

Gene content evolution in the arthropods

por Thomas, Gregg W. C., Dohmen, Elias, Hughes, Daniel S. T., Murali, Shwetha C., Poelchau, Monica, Glastad, Karl, Anstead, Clare A., Ayoub, Nadia A., Batterham, Phillip, Bellair, Michelle, Binford, Greta J., Chao, Hsu, Chen, Yolanda H., Childers, Christopher, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Duan, Jian J., Dugan, Shannon, Esposito, Lauren A., Friedrich, Markus, Garb, Jessica, Gasser, Robin B., Goodisman, Michael A. D., Gundersen-Rindal, Dawn E., Han, Yi, Handler, Alfred M., Hatakeyama, Masatsugu, Hering, Lars, Hunter, Wayne B., Ioannidis, Panagiotis, Jayaseelan, Joy C., Kalra, Divya, Khila, Abderrahman, Korhonen, Pasi K., Lee, Carol Eunmi, Lee, Sandra L., Li, Yiyuan, Lindsey, Amelia R. I., Mayer, Georg, McGregor, Alistair P., McKenna, Duane D., Misof, Bernhard, Munidasa, Mala, Munoz-Torres, Monica, Muzny, Donna M., Niehuis, Oliver, Osuji-Lacy, Nkechinyere, Palli, Subba R., Panfilio, Kristen A., Pechmann, Matthias, Perry, Trent, Peters, Ralph S., Poynton, Helen C., Prpic, Nikola-Michael, Qu, Jiaxin, Rotenberg, Dorith, Schal, Coby, Schoville, Sean D., Scully, Erin D., Skinner, Evette, Sloan, Daniel B., Stouthamer, Richard, Strand, Michael R., Szucsich, Nikolaus U., Wijeratne, Asela, Young, Neil D., Zattara, Eduardo E., Benoit, Joshua B., Zdobnov, Evgeny M., Pfrender, Michael E., Hackett, Kevin J., Werren, John H., Worley, Kim C., Gibbs, Richard A., Chipman, Ariel D., Waterhouse, Robert M., Bornberg-Bauer, Erich, Hahn, Matthew W., Richards, Stephen
Publicado 2020