BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language

por Hoyt, Charles Tapley, Domingo-Fernández, Daniel, Hofmann-Apitius, Martin
Publicado 2018

On the correspondence between the transcriptomic response of a compound and its effects on its targets

por Engler Hart, Chloe, Ence, Daniel, Healey, David, Domingo-Fernández, Daniel
Publicado 2023

Multi-ontology embeddings approach on human-aligned multi-ontologies representation for gene-disease associations prediction()

por Wang, Yihao, Wegner, Philipp, Domingo-Fernández, Daniel, Tom Kodamullil, Alpha
Publicado 2023

Ensembles of knowledge graph embedding models improve predictions for drug discovery

por Rivas-Barragan, Daniel, Domingo-Fernández, Daniel, Gadiya, Yojana, Healey, David
Publicado 2022

On the influence of several factors on pathway enrichment analysis

por Mubeen, Sarah, Tom Kodamullil, Alpha, Hofmann-Apitius, Martin, Domingo-Fernández, Daniel
Publicado 2022

PS4DR: a multimodal workflow for identification and prioritization of drugs based on pathway signatures

por Emon, Mohammad Asif, Domingo-Fernández, Daniel, Hoyt, Charles Tapley, Hofmann-Apitius, Martin
Publicado 2020

A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities

por Hoyt, Charles Tapley, Domingo-Fernández, Daniel, Balzer, Nora, Güldenpfennig, Anka, Hofmann-Apitius, Martin
Publicado 2018

ADataViewer: exploring semantically harmonized Alzheimer’s disease cohort datasets

por Salimi, Yasamin, Domingo-Fernández, Daniel, Bobis-Álvarez, Carlos, Hofmann-Apitius, Martin, Birkenbihl, Colin
Publicado 2022

Exploring the known chemical space of the plant kingdom: insights into taxonomic patterns, knowledge gaps, and bioactive regions

por Domingo-Fernández, Daniel, Gadiya, Yojana, Mubeen, Sarah, Healey, David, Norman, Bryan H., Colluru, Viswa
Publicado 2023

PathMe: merging and exploring mechanistic pathway knowledge

por Domingo-Fernández, Daniel, Mubeen, Sarah, Marín-Llaó, Josep, Hoyt, Charles Tapley, Hofmann-Apitius, Martin
Publicado 2019

Drug2ways: Reasoning over causal paths in biological networks for drug discovery

por Rivas-Barragan, Daniel, Mubeen, Sarah, Guim Bernat, Francesc, Hofmann-Apitius, Martin, Domingo-Fernández, Daniel
Publicado 2020

Evaluating the Alzheimer's disease data landscape

por Birkenbihl, Colin, Salimi, Yasamin, Domingo‐Fernándéz, Daniel, Lovestone, Simon, Fröhlich, Holger, Hofmann‐Apitius, Martin
Publicado 2020

DecoPath: a web application for decoding pathway enrichment analysis

por Mubeen, Sarah, Bharadhwaj, Vinay S, Gadiya, Yojana, Hofmann-Apitius, Martin, Kodamullil, Alpha T, Domingo-Fernández, Daniel
Publicado 2021

Using Multi-Scale Genetic, Neuroimaging and Clinical Data for Predicting Alzheimer’s Disease and Reconstruction of Relevant Biological Mechanisms

por Khanna, Shashank, Domingo-Fernández, Daniel, Iyappan, Anandhi, Emon, Mohammad Asif, Hofmann-Apitius, Martin, Fröhlich, Holger
Publicado 2018

ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases

por Domingo-Fernández, Daniel, Hoyt, Charles Tapley, Bobis-Álvarez, Carlos, Marín-Llaó, Josep, Hofmann-Apitius, Martin
Publicado 2018

Publisher Correction: ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases

por Domingo-Fernández, Daniel, Hoyt, Charles Tapley, Bobis-Álvarez, Carlos, Marín-Llaó, Josep, Hofmann-Apitius, Martin
Publicado 2019

The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling

por Mubeen, Sarah, Hoyt, Charles Tapley, Gemünd, André, Hofmann-Apitius, Martin, Fröhlich, Holger, Domingo-Fernández, Daniel
Publicado 2019

Corrigendum: The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling

por Mubeen, Sarah, Hoyt, Charles Tapley, Gemünd, André, Hofmann-Apitius, Martin, Fröhlich, Holger, Domingo-Fernández, Daniel
Publicado 2020

Data-Driven Modeling of Knowledge Assemblies in Understanding Comorbidity Between Type 2 Diabetes Mellitus and Alzheimer’s Disease

por Karki, Reagon, Madan, Sumit, Gadiya, Yojana, Domingo-Fernández, Daniel, Kodamullil, Alpha Tom, Hofmann-Apitius, Martin
Publicado 2020

Challenges of Integrative Disease Modeling in Alzheimer's Disease

por Golriz Khatami, Sepehr, Robinson, Christine, Birkenbihl, Colin, Domingo-Fernández, Daniel, Hoyt, Charles Tapley, Hofmann-Apitius, Martin
Publicado 2020