Genomic diversity of class I integrons from antimicrobial resistant strains of Salmonella Typhimurium isolated from livestock, poultry and humans

por Rao, Sangeeta, Linke, Lyndsey, Doster, Enrique, Hyatt, Doreene, Burgess, Brandy A., Magnuson, Roberta, Pabilonia, Kristy L., Morley, Paul S.
Publicado 2020

The impacts of viral infection and subsequent antimicrobials on the microbiome-resistome of growing pigs

por Gaire, Tara N., Odland, Carissa, Zhang, Bingzhou, Ray, Tui, Doster, Enrique, Nerem, Joel, Dee, Scott, Davies, Peter, Noyes, Noelle
Publicado 2022

MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data

por Doster, Enrique, Lakin, Steven M, Dean, Christopher J, Wolfe, Cory, Young, Jared G, Boucher, Christina, Belk, Keith E, Noyes, Noelle R, Morley, Paul S
Publicado 2019

MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput seque...

por Bonin, Nathalie, Doster, Enrique, Worley, Hannah, Pinnell, Lee J, Bravo, Jonathan E, Ferm, Peter, Marini, Simone, Prosperi, Mattia, Noyes, Noelle, Morley, Paul S, Boucher, Christina
Publicado 2022

A Cautionary Report for Pathogen Identification Using Shotgun Metagenomics; A Comparison to Aerobic Culture and Polymerase Chain Reaction for Salmonella enterica Identification

por Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Linke, Lyndsey, Magnuson, Roberta, Boucher, Christina, Belk, Keith E., Morley, Paul S.
Publicado 2019

Effects of Ceftiofur and Chlortetracycline on the Resistomes of Feedlot Cattle

por Weinroth, Margaret D., Scott, H. Morgan, Norby, Bo, Loneragan, Guy H., Noyes, Noelle R., Rovira, Pablo, Doster, Enrique, Yang, Xiang, Woerner, Dale R., Morley, Paul S., Belk, Keith E.
Publicado 2018

Metagenomic Characterization of the Microbiome and Resistome of Retail Ground Beef Products

por Doster, Enrique, Thomas, Kevin M., Weinroth, Maggie D., Parker, Jennifer K., Crone, Kathryn K., Arthur, Terrance M., Schmidt, John W., Wheeler, Tommy L., Belk, Keith E., Morley, Paul S.
Publicado 2020

MEGARes: an antimicrobial resistance database for high throughput sequencing

por Lakin, Steven M., Dean, Chris, Noyes, Noelle R., Dettenwanger, Adam, Ross, Anne Spencer, Doster, Enrique, Rovira, Pablo, Abdo, Zaid, Jones, Kenneth L., Ruiz, Jaime, Belk, Keith E., Morley, Paul S., Boucher, Christina
Publicado 2017

Evaluating the effects of antimicrobial drug use on the ecology of antimicrobial resistance and microbial community structure in beef feedlot cattle

por Doster, Enrique, Pinnell, Lee J., Noyes, Noelle R., Parker, Jennifer K., Anderson, Cameron A., Booker, Calvin W., Hannon, Sherry J., McAllister, Tim A., Gow, Sheryl P., Belk, Keith E., Morley, Paul S.
Publicado 2022

Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain

por Yang, Xiang, Noyes, Noelle R., Doster, Enrique, Martin, Jennifer N., Linke, Lyndsey M., Magnuson, Roberta J., Yang, Hua, Geornaras, Ifigenia, Woerner, Dale R., Jones, Kenneth L., Ruiz, Jaime, Boucher, Christina, Morley, Paul S., Belk, Keith E.
Publicado 2016

Resistomes and microbiome of meat trimmings and colon content from culled cows raised in conventional and organic production systems

por Weinroth, Margaret D., Thomas, Kevin M., Doster, Enrique, Vikram, Amit, Schmidt, John W., Arthur, Terrance M., Wheeler, Tommy L., Parker, Jennifer K., Hanes, Ayanna S., Alekoza, Najla, Wolfe, Cory, Metcalf, Jessica L., Morley, Paul S., Belk, Keith E.
Publicado 2022

Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period

por Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Lakin, Steven M., Dean, Christopher J., Linke, Lyndsey, Magnuson, Roberta, Jones, Kenneth I., Boucher, Christina, Ruiz, Jamie, Belk, Keith E., Morley, Paul S.
Publicado 2018

Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems

por Rovira, Pablo, McAllister, Tim, Lakin, Steven M., Cook, Shaun R., Doster, Enrique, Noyes, Noelle R., Weinroth, Maggie D., Yang, Xiang, Parker, Jennifer K., Boucher, Christina, Booker, Calvin W., Woerner, Dale R., Belk, Keith E., Morley, Paul S.
Publicado 2019

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing

por Noyes, Noelle R., Weinroth, Maggie E., Parker, Jennifer K., Dean, Chris J., Lakin, Steven M., Raymond, Robert A., Rovira, Pablo, Doster, Enrique, Abdo, Zaid, Martin, Jennifer N., Jones, Kenneth L., Ruiz, Jaime, Boucher, Christina A., Belk, Keith E., Morley, Paul S.
Publicado 2017

Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics

por Huebner, Katherine L., Martin, Jennifer N., Weissend, Carla J., Holzer, Katlyn L., Parker, Jennifer K., Lakin, Steven M., Doster, Enrique, Weinroth, Margaret D., Abdo, Zaid, Woerner, Dale R., Metcalf, Jessica L., Geornaras, Ifigenia, Bryant, Tony C., Morley, Paul S., Belk, Keith E.
Publicado 2019