Batch-Corrected Distance Mitigates Temporal and Spatial Variability for Clustering and Visualization of Single-Cell Gene Expression Data

por Liang, Shaoheng, Dou, Jinzhuang, Iqbal, Ramiz, Chen, Ken
Publicado 2023

Batch-Corrected Distance Mitigates Temporal and Spatial Variability for Clustering and Visualization of Single-Cell Gene Expression Data

por Liang, Shaoheng, Dou, Jinzhuang, Iqbal, Ramiz, Chen, Ken
Publicado 2020

Sensei: how many samples to tell a change in cell type abundance?

por Liang, Shaoheng, Willis, Jason, Dou, Jinzhuang, Mohanty, Vakul, Huang, Yuefan, Vilar, Eduardo, Chen, Ken
Publicado 2022

Editorial: Advances in mathematical and computational oncology, volume III

por Bebis, George, Kato, Mamoru, Kohandel, Mohammad, Wilkie, Kathleen, Antunes, Dinler A., Chen, Ken, Dou, Jinzhuang
Publicado 2023

Reference-free SNP calling: improved accuracy by preventing incorrect calls from repetitive genomic regions

por Dou, Jinzhuang, Zhao, Xiqiang, Fu, Xiaoteng, Jiao, Wenqian, Wang, Nannan, Zhang, Lingling, Hu, Xiaoli, Wang, Shi, Bao, Zhenmin
Publicado 2012

Estimation of kinship coefficient in structured and admixed populations using sparse sequencing data

por Dou, Jinzhuang, Sun, Baoluo, Sim, Xueling, Hughes, Jason D., Reilly, Dermot F., Tai, E. Shyong, Liu, Jianjun, Wang, Chaolong
Publicado 2017

RADtyping: An Integrated Package for Accurate De Novo Codominant and Dominant RAD Genotyping in Mapping Populations

por Fu, Xiaoteng, Dou, Jinzhuang, Mao, Junxia, Su, Hailin, Jiao, Wenqian, Zhang, Lingling, Hu, Xiaoli, Huang, Xiaoting, Wang, Shi, Bao, Zhenmin
Publicado 2013

A Scallop IGF Binding Protein Gene: Molecular Characterization and Association of Variants with Growth Traits

por Feng, Liying, Li, Xue, Yu, Qian, Ning, Xianhui, Dou, Jinzhuang, Zou, Jiajun, Zhang, Lingling, Wang, Shi, Hu, Xiaoli, Bao, Zhenmin
Publicado 2014

Evaluation of the 2b-RAD method for genomic selection in scallop breeding

por Dou, Jinzhuang, Li, Xue, Fu, Qiang, Jiao, Wenqian, Li, Yangping, Li, Tianqi, Wang, Yangfan, Hu, Xiaoli, Wang, Shi, Bao, Zhenmin
Publicado 2016

MethylRAD: a simple and scalable method for genome-wide DNA methylation profiling using methylation-dependent restriction enzymes

por Wang, Shi, Lv, Jia, Zhang, Lingling, Dou, Jinzhuang, Sun, Yan, Li, Xue, Fu, Xiaoteng, Dou, Huaiqian, Mao, Junxia, Hu, Xiaoli, Bao, Zhenmin
Publicado 2015

Whole-Genome Restriction Mapping by “Subhaploid”-Based RAD Sequencing: An Efficient and Flexible Approach for Physical Mapping and Genome Scaffolding

por Dou, Jinzhuang, Dou, Huaiqian, Mu, Chuang, Zhang, Lingling, Li, Yangping, Wang, Jia, Li, Tianqi, Li, Yuli, Hu, Xiaoli, Wang, Shi, Bao, Zhenmin
Publicado 2017

MEDALT: single-cell copy number lineage tracing enabling gene discovery

por Wang, Fang, Wang, Qihan, Mohanty, Vakul, Liang, Shaoheng, Dou, Jinzhuang, Han, Jincheng, Minussi, Darlan Conterno, Gao, Ruli, Ding, Li, Navin, Nicholas, Chen, Ken
Publicado 2021

Genetic Admixture in the Culturally Unique Peranakan Chinese Population in Southeast Asia

por Wu, Degang, Li, Peter Yiqing, Pan, Bangfen, Tiang, Zenia, Dou, Jinzhuang, Williantarra, Ivanna, Pribowo, Amadeus Yeremia, Nurdiansyah, Rizky, Foo, Roger S Y, Wang, Chaolong
Publicado 2021

High-Resolution Linkage and Quantitative Trait Locus Mapping Aided by Genome Survey Sequencing: Building Up An Integrative Genomic Framework for a Bivalve Mollusc

por Jiao, Wenqian, Fu, Xiaoteng, Dou, Jinzhuang, Li, Hengde, Su, Hailin, Mao, Junxia, Yu, Qian, Zhang, Lingling, Hu, Xiaoli, Huang, Xiaoting, Wang, Yangfan, Wang, Shi, Bao, Zhenmin
Publicado 2014

Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Sea Cucumber Apostichopus japonicus

por Tian, Meilin, Li, Yangping, Jing, Jing, Mu, Chuang, Du, Huixia, Dou, Jinzhuang, Mao, Junxia, Li, Xue, Jiao, Wenqian, Wang, Yangfan, Hu, Xiaoli, Wang, Shi, Wang, Ruijia, Bao, Zhenmin
Publicado 2015

Systematic decomposition of sequence determinants governing CRISPR/Cas9 specificity

por Fu, Rongjie, He, Wei, Dou, Jinzhuang, Villarreal, Oscar D., Bedford, Ella, Wang, Helen, Hou, Connie, Zhang, Liang, Wang, Yalong, Ma, Dacheng, Chen, Yiwen, Gao, Xue, Depken, Martin, Xu, Han
Publicado 2022

Bi-order multimodal integration of single-cell data

por Dou, Jinzhuang, Liang, Shaoheng, Mohanty, Vakul, Miao, Qi, Huang, Yuefan, Liang, Qingnan, Cheng, Xuesen, Kim, Sangbae, Choi, Jongsu, Li, Yumei, Li, Li, Daher, May, Basar, Rafet, Rezvani, Katayoun, Chen, Rui, Chen, Ken
Publicado 2022

Direct CD32 T-cell cytotoxicity: implications for breast cancer prognosis and treatment

por Sconocchia, Giuseppe, Lanzilli, Giulia, Cesarini, Valeriana, Silvestris, Domenico A, Rezvani, Katayoun, Arriga, Roberto, Caratelli, Sara, Chen, Ken, Dou, Jinzhuang, Cenciarelli, Carlo, Toietta, Gabriele, Baldari, Silvia, Sconocchia, Tommaso, De Paolis, Francesca, Aureli, Anna, Iezzi, Giandomenica, Irno Consalvo, Maria, Buccisano, Francesco, del Principe, Maria I, Maurillo, Luca, Venditti, Adriano, Ottaviani, Alessio, Spagnoli, Giulio C
Publicado 2022

KLF5 governs sphingolipid metabolism and barrier function of the skin

por Lyu, Ying, Guan, Yinglu, Deliu, Lisa, Humphrey, Ericka, Frontera, Joanna K., Yang, Youn Joo, Zamler, Daniel, Kim, Kun Hee, Mohanty, Vakul, Jin, Kevin, Liu, Virginia, Dou, Jinzhuang, Veillon, Lucas J., Kumar, Shwetha V., Lorenzi, Philip L., Chen, Yang, McAndrews, Kathleen M., Grivennikov, Sergei, Song, Xingzhi, Zhang, Jianhua, Xi, Yuanxin, Wang, Jing, Chen, Ken, Nagarajan, Priyadharsini, Ge, Yejing
Publicado 2022

Loss of metabolic fitness drives tumor resistance after CAR-NK cell therapy and can be overcome by cytokine engineering

por Li, Li, Mohanty, Vakul, Dou, Jinzhuang, Huang, Yuefan, Banerjee, Pinaki P., Miao, Qi, Lohr, Jens G., Vijaykumar, Tushara, Frede, Julia, Knoechel, Birgit, Muniz-Feliciano, Luis, Laskowski, Tamara J., Liang, Shaoheng, Moyes, Judy S., Nandivada, Vandana, Basar, Rafet, Kaplan, Mecit, Daher, May, Liu, Enli, Li, Ye, Acharya, Sunil, Lin, Paul, Shanley, Mayra, Rafei, Hind, Marin, David, Mielke, Stephan, Champlin, Richard E., Shpall, Elizabeth J., Chen, Ken, Rezvani, Katayoun
Publicado 2023