Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer

por Doughty, Emma L., Sergeant, Martin J., Adetifa, Ifedayo, Antonio, Martin, Pallen, Mark J.
Publicado 2014

Extended-Spectrum β-Lactamase Genes Traverse the Escherichia coli Populations of Intensive Care Unit Patients, Staff, and Environment

por Moran, Robert A., Baomo, Liu, Doughty, Emma L., Guo, Yingyi, Ba, Xiaoliang, van Schaik, Willem, Zhuo, Chao, McNally, Alan
Publicado 2023

Spread of Carbapenem-Resistant Klebsiella pneumoniae in an Intensive Care Unit: A Whole-Genome Sequence-Based Prospective Observational Study

por Wei, Li, Wu, Linfei, Wen, Hongxia, Feng, Yu, Zhu, Shichao, Liu, Ying, Tang, Li, Doughty, Emma, van Schaik, Willem, McNally, Alan, Zong, Zhiyong
Publicado 2021

GR13-type plasmids in Acinetobacter potentiate the accumulation and horizontal transfer of diverse accessory genes

por Moran, Robert A., Liu, Haiyang, Doughty, Emma L., Hua, Xiaoting, Cummins, Elizabeth A., Liveikis, Tomas, McNally, Alan, Zhou, Zhihui, van Schaik, Willem, Yu, Yunsong
Publicado 2022

Endemicity and diversification of carbapenem-resistant Acinetobacter baumannii in an intensive care unit

por Doughty, Emma L., Liu, Haiyang, Moran, Robert A., Hua, Xiaoting, Ba, Xiaoliang, Guo, Feng, Chen, Xiangping, Zhang, Linghong, Holmes, Mark, van Schaik, Willem, McNally, Alan, Yu, Yunsong
Publicado 2023

Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria

por Senghore, Madikay, Otu, Jacob, Witney, Adam, Gehre, Florian, Doughty, Emma L., Kay, Gemma L., Butcher, Phillip, Salako, Kayode, Kehinde, Aderemi, Onyejepu, Nneka, Idigbe, Emmanuel, Corrah, Tumani, de Jong, Bouke, Pallen, Mark J., Antonio, Martin
Publicado 2017

Dynamics of Salmonella enterica and antimicrobial resistance in the Brazilian poultry industry and global impacts on public health

por Alikhan, Nabil-Fareed, Moreno, Luisa Zanolli, Castellanos, Luis Ricardo, Chattaway, Marie Anne, McLauchlin, Jim, Lodge, Martin, O’Grady, Justin, Zamudio, Roxana, Doughty, Emma, Petrovska, Liljana, Cunha, Marcos Paulo Vieira, Knöbl, Terezinha, Moreno, Andrea Micke, Mather, Alison E.
Publicado 2022

TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization

por Ambrosio, Frank J., Scribner, Michelle R., Wright, Sage M., Otieno, James R., Doughty, Emma L., Gorzalski, Andrew, Siao, Danielle Denise, Killian, Steve, Hua, Chi, Schneider, Emily, Tran, Michael, Varghese, Vici, Libuit, Kevin G., Pandori, Mark, Sevinsky, Joel R., Hess, David
Publicado 2023

Accelerating bioinformatics implementation in public health

por Libuit, Kevin G., Doughty, Emma L., Otieno, James R., Ambrosio, Frank, Kapsak, Curtis J., Smith, Emily A., Wright, Sage M., Scribner, Michelle R., Petit III, Robert A., Mendes, Catarina Inês, Huergo, Marcela, Legacki, Gregory, Loreth, Christine, Park, Daniel J., Sevinsky, Joel R.
Publicado 2023

Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing

por Senghore, Madikay, Bayliss, Sion C., Kwambana-Adams, Brenda A., Foster-Nyarko, Ebenezer, Manneh, Jainaba, Dione, Michel, Badji, Henry, Ebruke, Chinelo, Doughty, Emma L., Thorpe, Harry A., Jasinska, Anna J., Schmitt, Christopher A., Cramer, Jennifer D., Turner, Trudy R., Weinstock, George, Freimer, Nelson B., Pallen, Mark J., Feil, Edward J., Antonio, Martin
Publicado 2016