Multi-genome biology

por Down, Thomas A
Publicado 2006

The landscape of RNA polymerase II transcription initiation in C. elegans reveals a novel enhancer architecture

por Chen, Ron, Down, Thomas, Ahringer, Julie
Publicado 2013

What can we learn from noncoding regions of similarity between genomes?

por Down, Thomas A, Hubbard, Tim JP
Publicado 2004

NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence

por Down, Thomas A., Hubbard, Tim J. P.
Publicado 2005

A machine learning strategy to identify candidate binding sites in human protein-coding sequence

por Down, Thomas, Leong, Bernard, Hubbard, Tim JP
Publicado 2006

NestedMICA as an ab initio protein motif discovery tool

por Doğruel, Mutlu, Down, Thomas A, Hubbard, Tim JP
Publicado 2008

Metamotifs - a generative model for building families of nucleotide position weight matrices

por Piipari, Matias, Down, Thomas A, Hubbard, Tim JP
Publicado 2010

Assessing Computational Methods of Cis-Regulatory Module Prediction

por Su, Jing, Teichmann, Sarah A., Down, Thomas A.
Publicado 2010

Chromatin Accessibility Data Sets Show Bias Due to Sequence Specificity of the DNase I Enzyme

por Koohy, Hashem, Down, Thomas A., Hubbard, Tim J.
Publicado 2013

Dalliance: interactive genome viewing on the web

por Down, Thomas A., Piipari, Matias, Hubbard, Tim J. P.
Publicado 2011

A Comparison of Peak Callers Used for DNase-Seq Data

por Koohy, Hashem, Down, Thomas A., Spivakov, Mikhail, Hubbard, Tim
Publicado 2014

Systematic bias in high-throughput sequencing data and its correction by BEADS

por Cheung, Ming-Sin, Down, Thomas A., Latorre, Isabel, Ahringer, Julie
Publicado 2011

Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster

por Down, Thomas A, Bergman, Casey M, Su, Jing, Hubbard, Tim J. P
Publicado 2007

iMotifs: an integrated sequence motif visualization and analysis environment

por Piipari, Matias, Down, Thomas A., Saini, Harpreet, Enright, Anton, Hubbard, Tim J.P.
Publicado 2010

Differential chromatin marking of introns and expressed exons by H3K36me3

por Kolasinska-Zwierz, Paulina, Down, Thomas, Latorre, Isabel, Liu, Tao, Liu, X. Shirley, Ahringer, Julie
Publicado 2009

Integrating sequence and structural biology with DAS

por Prlić, Andreas, Down, Thomas A, Kulesha, Eugene, Finn, Robert D, Kähäri, Andreas, Hubbard, Tim JP
Publicado 2007

Differential DNA Methylation Correlates with Differential Expression of Angiogenic Factors in Human Heart Failure

por Movassagh, Mehregan, Choy, Mun-Kit, Goddard, Martin, Bennett, Martin R., Down, Thomas A., Foo, Roger S.-Y.
Publicado 2010

Binding of TFIIIC to SINE Elements Controls the Relocation of Activity-Dependent Neuronal Genes to Transcription Factories

por Crepaldi, Luca, Policarpi, Cristina, Coatti, Alessandro, Sherlock, William T., Jongbloets, Bart C., Down, Thomas A., Riccio, Antonella
Publicado 2013

Synergistic Mechanisms of DNA Demethylation during Transition to Ground-State Pluripotency

por Hackett, Jamie A., Dietmann, Sabine, Murakami, Kazuhiro, Down, Thomas A., Leitch, Harry G., Surani, M. Azim
Publicado 2013

Extreme HOT regions are CpG-dense promoters in C. elegans and humans

por Chen, Ron A.-J., Stempor, Przemyslaw, Down, Thomas A., Zeiser, Eva, Feuer, Sky K., Ahringer, Julie
Publicado 2014