Multi-genome biology

por Down, Thomas A
Publicado 2006

What can we learn from noncoding regions of similarity between genomes?

por Down, Thomas A, Hubbard, Tim JP
Publicado 2004

NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence

por Down, Thomas A., Hubbard, Tim J. P.
Publicado 2005

NestedMICA as an ab initio protein motif discovery tool

por Doğruel, Mutlu, Down, Thomas A, Hubbard, Tim JP
Publicado 2008

Metamotifs - a generative model for building families of nucleotide position weight matrices

por Piipari, Matias, Down, Thomas A, Hubbard, Tim JP
Publicado 2010

Assessing Computational Methods of Cis-Regulatory Module Prediction

por Su, Jing, Teichmann, Sarah A., Down, Thomas A.
Publicado 2010

Chromatin Accessibility Data Sets Show Bias Due to Sequence Specificity of the DNase I Enzyme

por Koohy, Hashem, Down, Thomas A., Hubbard, Tim J.
Publicado 2013

Dalliance: interactive genome viewing on the web

por Down, Thomas A., Piipari, Matias, Hubbard, Tim J. P.
Publicado 2011

A Comparison of Peak Callers Used for DNase-Seq Data

por Koohy, Hashem, Down, Thomas A., Spivakov, Mikhail, Hubbard, Tim
Publicado 2014

Systematic bias in high-throughput sequencing data and its correction by BEADS

por Cheung, Ming-Sin, Down, Thomas A., Latorre, Isabel, Ahringer, Julie
Publicado 2011

Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster

por Down, Thomas A, Bergman, Casey M, Su, Jing, Hubbard, Tim J. P
Publicado 2007

iMotifs: an integrated sequence motif visualization and analysis environment

por Piipari, Matias, Down, Thomas A., Saini, Harpreet, Enright, Anton, Hubbard, Tim J.P.
Publicado 2010

Integrating sequence and structural biology with DAS

por Prlić, Andreas, Down, Thomas A, Kulesha, Eugene, Finn, Robert D, Kähäri, Andreas, Hubbard, Tim JP
Publicado 2007

Differential DNA Methylation Correlates with Differential Expression of Angiogenic Factors in Human Heart Failure

por Movassagh, Mehregan, Choy, Mun-Kit, Goddard, Martin, Bennett, Martin R., Down, Thomas A., Foo, Roger S.-Y.
Publicado 2010

Binding of TFIIIC to SINE Elements Controls the Relocation of Activity-Dependent Neuronal Genes to Transcription Factories

por Crepaldi, Luca, Policarpi, Cristina, Coatti, Alessandro, Sherlock, William T., Jongbloets, Bart C., Down, Thomas A., Riccio, Antonella
Publicado 2013

Synergistic Mechanisms of DNA Demethylation during Transition to Ground-State Pluripotency

por Hackett, Jamie A., Dietmann, Sabine, Murakami, Kazuhiro, Down, Thomas A., Leitch, Harry G., Surani, M. Azim
Publicado 2013

Extreme HOT regions are CpG-dense promoters in C. elegans and humans

por Chen, Ron A.-J., Stempor, Przemyslaw, Down, Thomas A., Zeiser, Eva, Feuer, Sky K., Ahringer, Julie
Publicado 2014

Genome-wide conserved consensus transcription factor binding motifs are hyper-methylated

por Choy, Mun-Kit, Movassagh, Mehregan, Goh, Hock-Guan, Bennett, Martin R, Down, Thomas A, Foo, Roger SY
Publicado 2010

Genome-Wide Identification of Targets and Function of Individual MicroRNAs in Mouse Embryonic Stem Cells

por Hanina, Sophie A., Mifsud, William, Down, Thomas A., Hayashi, Katsuhiko, O'Carroll, Dónal, Lao, Kaiqin, Miska, Eric A., Surani, M. Azim
Publicado 2010

Genome Wide Analysis of Acute Myeloid Leukemia Reveal Leukemia Specific Methylome and Subtype Specific Hypomethylation of Repeats

por Saied, Marwa H., Marzec, Jacek, Khalid, Sabah, Smith, Paul, Down, Thomas A., Rakyan, Vardhman K., Molloy, Gael, Raghavan, Manoj, Debernardi, Silvana, Young, Bryan D.
Publicado 2012