Interfacing Seurat with the R tidy universe

por Mangiola, Stefano, Doyle, Maria A, Papenfuss, Anthony T
Publicado 2021

tidybulk: an R tidy framework for modular transcriptomic data analysis

por Mangiola, Stefano, Molania, Ramyar, Dong, Ruining, Doyle, Maria A., Papenfuss, Anthony T.
Publicado 2021

Drug target prediction and prioritization: using orthology to predict essentiality in parasite genomes

por Doyle, Maria A, Gasser, Robin B, Woodcroft, Ben J, Hall, Ross S, Ralph, Stuart A
Publicado 2010

LeishCyc: a biochemical pathways database for Leishmania major

por Doyle, Maria A, MacRae, James I, De Souza, David P, Saunders, Eleanor C, McConville, Malcolm J, Likić, Vladimir A
Publicado 2009

A simple consensus approach improves somatic mutation prediction accuracy

por Goode, David L, Hunter, Sally M, Doyle, Maria A, Ma, Tao, Rowley, Simone M, Choong, David, Ryland, Georgina L, Campbell, Ian G
Publicado 2013

The RNA workbench 2.0: next generation RNA data analysis

por Fallmann, Jörg, Videm, Pavankumar, Bagnacani, Andrea, Batut, Bérénice, Doyle, Maria A, Klingstrom, Tomas, Eggenhofer, Florian, Stadler, Peter F, Backofen, Rolf, Grüning, Björn
Publicado 2019

Germline whole exome sequencing of a family with appendiceal mucinous tumours presenting with pseudomyxoma peritonei

por Lung, Mei Sim, Mitchell, Catherine A., Doyle, Maria A., Lynch, Andrew C., Gorringe, Kylie L., Bowtell, David D. L., Campbell, Ian G., Trainer, Alison H.
Publicado 2020

Molecular comparison of pure ovarian fibroma with serous benign ovarian tumours

por Hunter, Sally M., Dall, Genevieve V., Doyle, Maria A., Lupat, Richard, Li, Jason, Allan, Prue, Rowley, Simone M., Bowtell, David, Campbell, Ian G., Gorringe, Kylie L.
Publicado 2020

MicroRNA Genes and Their Target 3′-Untranslated Regions Are Infrequently Somatically Mutated in Ovarian Cancers

por Ryland, Georgina L., Bearfoot, Jennifer L., Doyle, Maria A., Boyle, Samantha E., Choong, David Y. H., Rowley, Simone M., Tothill, Richard W., Gorringe, Kylie L., Campbell, Ian G.
Publicado 2012

CONTRA: copy number analysis for targeted resequencing

por Li, Jason, Lupat, Richard, Amarasinghe, Kaushalya C., Thompson, Ella R., Doyle, Maria A., Ryland, Georgina L., Tothill, Richard W., Halgamuge, Saman K., Campbell, Ian G., Gorringe, Kylie L.
Publicado 2012

Identification of Attractive Drug Targets in Neglected-Disease Pathogens Using an In Silico Approach

por Crowther, Gregory J., Shanmugam, Dhanasekaran, Carmona, Santiago J., Doyle, Maria A., Hertz-Fowler, Christiane, Berriman, Matthew, Nwaka, Solomon, Ralph, Stuart A., Roos, David S., Van Voorhis, Wesley C., Agüero, Fernán
Publicado 2010

An integrative bioinformatic predictor of protein sub-cellular localisation in malaria

por Woodcroft, Ben J, Radloff, Robert, Yeoh, Lee M, Scanlon, Kristie-Lee, Doyle, Maria A, van Dooren, Giel G, McFadden, Geoffrey I, Tonkin, Christopher J, Speed, Terence P, Ralph, Stuart A
Publicado 2011

Loss of heterozygosity: what is it good for?

por Ryland, Georgina L., Doyle, Maria A., Goode, David, Boyle, Samantha E., Choong, David Y.H., Rowley, Simone M., Li, Jason, Bowtell, David DL, Tothill, Richard W., Campbell, Ian G., Gorringe, Kylie L.
Publicado 2015

Massively Parallel Sequencing and Analysis of the Necator americanus Transcriptome

por Cantacessi, Cinzia, Mitreva, Makedonka, Jex, Aaron R., Young, Neil D., Campbell, Bronwyn E., Hall, Ross S., Doyle, Maria A., Ralph, Stuart A., Rabelo, Elida M., Ranganathan, Shoba, Sternberg, Paul W., Loukas, Alex, Gasser, Robin B.
Publicado 2010

Mutational landscape of mucinous ovarian carcinoma and its neoplastic precursors

por Ryland, Georgina L., Hunter, Sally M., Doyle, Maria A., Caramia, Franco, Li, Jason, Rowley, Simone M., Christie, Michael, Allan, Prue E., Stephens, Andrew N., Bowtell, David D L, Campbell, Ian G., Gorringe, Kylie L.
Publicado 2015

Erratum to: Mutational landscape of mucinous ovarian carcinoma and its neoplastic precursors

por Ryland, Georgina L., Hunter, Sally M., Doyle, Maria A., Caramia, Franco, Li, Jason, Rowley, Simone M., Christie, Michael, Allan, Prue E., Stephens, Andrew N., Bowtell, David D. L., Campbell, Ian G., Gorringe, Kylie L.
Publicado 2017

PathOS: a decision support system for reporting high throughput sequencing of cancers in clinical diagnostic laboratories

por Doig, Kenneth D., Fellowes, Andrew, Bell, Anthony H., Seleznev, Andrei, Ma, David, Ellul, Jason, Li, Jason, Doyle, Maria A., Thompson, Ella R., Kumar, Amit, Lara, Luis, Vedururu, Ravikiran, Reid, Gareth, Conway, Thomas, Papenfuss, Anthony T., Fox, Stephen B.
Publicado 2017

Exome Sequencing Identifies Rare Deleterious Mutations in DNA Repair Genes FANCC and BLM as Potential Breast Cancer Susceptibility Alleles

por Thompson, Ella R., Doyle, Maria A., Ryland, Georgina L., Rowley, Simone M., Choong, David Y. H., Tothill, Richard W., Thorne, Heather, Barnes, Daniel R., Li, Jason, Ellul, Jason, Philip, Gayle K., Antill, Yoland C., James, Paul A., Trainer, Alison H., Mitchell, Gillian, Campbell, Ian G.
Publicado 2012

Prevalence of PALB2 mutations in Australian familial breast cancer cases and controls

por Thompson, Ella R., Gorringe, Kylie L., Rowley, Simone M., Wong-Brown, Michelle W., McInerny, Simone, Li, Na, Trainer, Alison H., Devereux, Lisa, Doyle, Maria A., Li, Jason, Lupat, Richard, Delatycki, Martin B., Mitchell, Gillian, James, Paul A., Scott, Rodney J., Campbell, Ian G.
Publicado 2015

Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment

por Li, Jason, Doyle, Maria A., Saeed, Isaam, Wong, Stephen Q., Mar, Victoria, Goode, David L., Caramia, Franco, Doig, Ken, Ryland, Georgina L., Thompson, Ella R., Hunter, Sally M., Halgamuge, Saman K., Ellul, Jason, Dobrovic, Alexander, Campbell, Ian G., Papenfuss, Anthony T., McArthur, Grant A., Tothill, Richard W.
Publicado 2014