The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies

por Elmas, Abdulkadir, Wang, Xiaodong, Dresch, Jacqueline M.
Publicado 2017

Transcriptome profile in Drosophila Kc and S2 embryonic cell lines

por Klonaros, Daniel, Dresch, Jacqueline M, Drewell, Robert A
Publicado 2023

MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding

por Zellers, Rowan G, Drewell, Robert A, Dresch, Jacqueline M
Publicado 2015

Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects

por Dresch, Jacqueline M, Liu, Xiaozhou, Arnosti, David N, Ay, Ahmet
Publicado 2010

Global sensitivity analysis of a dynamic model for gene expression in Drosophila embryos

por McCarthy, Gregory D., Drewell, Robert A., Dresch, Jacqueline M.
Publicado 2015

Investigating the sequence landscape in the Drosophila initiator core promoter element using an enhanced MARZ algorithm

por Dresch, Jacqueline M., Conrad, Regan D., Klonaros, Daniel, Drewell, Robert A.
Publicado 2023

Flanking sequence context-dependent transcription factor binding in early Drosophila development

por Stringham, Jessica L, Brown, Adam S, Drewell, Robert A, Dresch, Jacqueline M
Publicado 2013

Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome

por Dresch, Jacqueline M., Zellers, Rowan G., Bork, Daniel K., Drewell, Robert A.
Publicado 2016

Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo

por Sayal, Rupinder, Dresch, Jacqueline M, Pushel, Irina, Taylor, Benjamin R, Arnosti, David N
Publicado 2016

The Dictyostelium discoideum genome lacks significant DNA methylation and uncovers palindromic sequences as a source of false positives in bisulfite sequencing

por Drewell, Robert A, Cormier, Tayla C, Steenwyk, Jacob L, Denis, James St, Tabima, Javier F, Dresch, Jacqueline M, Larochelle, Denis A
Publicado 2023