A transcriptomic dataset evaluating the effect of radiotherapy injury on cells of skin and soft tissue

por Shukla, Lipi, Lee, Stuart A., Du, Mei R.M., Karnezis, Tara, Ritchie, Matthew E., Shayan, Ramin
Publicado 2022

Corrigendum to ‘A transcriptomic dataset evaluating the effect of radiotherapy injury on cells of skin and soft tissue’ Data in Brief 41 (2022) 107828

por Shuka, Lipi, Lee, Stuart A., Du, Mei R.M., Karnezis, Tara, Ritchie, Matthew E., Shayan, Ramin
Publicado 2022

scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor

por Amarasinghe, Shanika L, Yang, Phil, Voogd, Oliver, Yang, Haoyu, Du, Mei R M, Su, Shian, Brown, Daniel V, Jabbari, Jafar S, Bowden, Rory, Ritchie, Matthew E
Publicado 2023

Actinobacillus pleuropneumoniae encodes multiple phase-variable DNA methyltransferases that control distinct phasevarions

por Nahar, Nusrat, Tram, Greg, Jen, Freda E-C, Phillips, Zachary N, Weinert, Lucy A, Bossé, Janine T, Jabbari, Jafar S, Gouil, Quentin, Du, Mei R M, Ritchie, Matthew E, Bowden, Rory, Langford, Paul R, Tucker, Alexander W, Jennings, Michael P, Turni, Conny, Blackall, Patrick J, Atack, John M
Publicado 2023

Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing

por Tian, Luyi, Jabbari, Jafar S., Thijssen, Rachel, Gouil, Quentin, Amarasinghe, Shanika L., Voogd, Oliver, Kariyawasam, Hasaru, Du, Mei R. M., Schuster, Jakob, Wang, Changqing, Su, Shian, Dong, Xueyi, Law, Charity W., Lucattini, Alexis, Prawer, Yair David Joseph, Collar-Fernández, Coralina, Chung, Jin D., Naim, Timur, Chan, Audrey, Ly, Chi Hai, Lynch, Gordon S., Ryall, James G., Anttila, Casey J. A., Peng, Hongke, Anderson, Mary Ann, Flensburg, Christoffer, Majewski, Ian, Roberts, Andrew W., Huang, David C. S., Clark, Michael B., Ritchie, Matthew E.
Publicado 2021

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

por Pardo-Palacios, Francisco J., Wang, Dingjie, Reese, Fairlie, Diekhans, Mark, Carbonell-Sala, Sílvia, Williams, Brian, Loveland, Jane E., De María, Maite, Adams, Matthew S., Balderrama-Gutierrez, Gabriela, Behera, Amit K., Gonzalez, Jose M., Hunt, Toby, Lagarde, Julien, Liang, Cindy E., Li, Haoran, Jerryd Meade, Marcus, Moraga Amador, David A., Prjibelski, Andrey D., Birol, Inanc, Bostan, Hamed, Brooks, Ashley M., Hasan Çelik, Muhammed, Chen, Ying, Du, Mei R,M., Felton, Colette, Göke, Jonathan, Hafezqorani, Saber, Herwig, Ralf, Kawaji, Hideya, Lee, Joseph, Liang Li, Jian, Lienhard, Matthias, Mikheenko, Alla, Mulligan, Dennis, Ming Nip, Ka, Pertea, Mihaela, Ritchie, Matthew E., Sim, Andre D., Tang, Alison D., Kei Wan, Yuk, Wang, Changqing, Wong, Brandon Y., Yang, Chen, Barnes, If, Berry, Andrew, Capella, Salvador, Dhillon, Namrita, Fernandez-Gonzalez, Jose M., Ferrández-Peral, Luis, Garcia-Reyero, Natàlia, Goetz, Stefan, Hernández-Ferrer, Carles, Kondratova, Liudmyla, Liu, Tianyuan, Martinez-Martin, Alessandra, Menor, Carlos, Mestre-Tomás, Jorge, Mudge, Jonathan M., Panayotova, Nedka G., Paniagua, Alejandro, Repchevsky, Dmitry, Rouchka, Eric, Saint-John, Brandon, Sapena, Enrique, Sheynkman, Leon, Laird Smith, Melissa, Suner, Marie-Marthe, Takahashi, Hazuki, Youngworth, Ingrid Ashley., Carninci, Piero, Denslow, Nancy D., Guigó, Roderic, Hunter, Margaret E., Tilgner, Hagen U., Wold, Barbara J., Vollmers, Christopher, Frankish, Adam, Fai Au, Kin, Sheynkman, Gloria M., Mortazavi, Ali, Conesa, Ana, Brooks, Angela N.
Publicado 2023