Somatic mutations in CDH1 and CTNNB1 in primary carcinomas at 13 anatomic sites

por Busch, Evan L., Hornick, Jason L., Umeton, Renato, Albayrak, Adem, Lindeman, Neal I., MacConaill, Laura E., Garcia, Elizabeth P., Ducar, Matthew, Rebbeck, Timothy R.
Publicado 2017

Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing

por MacConaill, Laura E., Burns, Robert T., Nag, Anwesha, Coleman, Haley A., Slevin, Michael K., Giorda, Kristina, Light, Madelyn, Lai, Kevin, Jarosz, Mirna, McNeill, Matthew S., Ducar, Matthew D., Meyerson, Matthew, Thorner, Aaron R.
Publicado 2018

BreaKmer: detection of structural variation in targeted massively parallel sequencing data using kmers

por Abo, Ryan P., Ducar, Matthew, Garcia, Elizabeth P., Thorner, Aaron R., Rojas-Rudilla, Vanesa, Lin, Ling, Sholl, Lynette M., Hahn, William C., Meyerson, Matthew, Lindeman, Neal I., Van Hummelen, Paul, MacConaill, Laura E.
Publicado 2015

Massively parallel sequencing of formalin-fixed paraffin-embedded tissues

por Erlich, Rachel L, Palescandolo, Emanuele, Jones, Robert T, Sunkavalli, Ashwini, Raza, Alina, Ducar, Matthew, Hatton, Charles, Go, Christina, Roden, Christine, Hanna, Megan, Mills, Adri, Adusumilli, Ravali, Kumar, Prateek, Brastianos, Priscilla K, Meyerson, Matthew L, Hahn, William C, MacConaill, Laura E, Van Hummelen, Paul
Publicado 2012

Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations

por Brastianos, Priscilla K., Horowitz, Peleg M., Santagata, Sandro, Jones, Robert T., McKenna, Aaron, Getz, Gad, Ligon, Keith L., Palescandolo, Emanuele, Van Hummelen, Paul, Ducar, Matthew D., Raza, Alina, Sunkavalli, Ashwini, MacConaill, Laura E., Stemmer-Rachamimov, Anat O., Louis, David N., Hahn, William C., Dunn, Ian F., Beroukhim, Rameen
Publicado 2013

The impact of tumor profiling approaches and genomic data strategies for cancer precision medicine

por Garofalo, Andrea, Sholl, Lynette, Reardon, Brendan, Taylor-Weiner, Amaro, Amin-Mansour, Ali, Miao, Diana, Liu, David, Oliver, Nelly, MacConaill, Laura, Ducar, Matthew, Rojas-Rudilla, Vanesa, Giannakis, Marios, Ghazani, Arezou, Gray, Stacy, Janne, Pasi, Garber, Judy, Joffe, Steve, Lindeman, Neal, Wagle, Nikhil, Garraway, Levi A., Van Allen, Eliezer M.
Publicado 2016

Hedgehog pathway mutations drive oncogenic transformation in high-risk T-cell acute lymphoblastic leukemia

por Burns, Melissa A., Liao, Zi Wei, Yamagata, Natsuko, Pouliot, Gayle P., Stevenson, Kristen E., Neuberg, Donna S., Thorner, Aaron R., Ducar, Matthew, Silverman, Emily A., Hunger, Stephen P., Loh, Mignon L., Winter, Stuart S., Dunsmore, Kimberly P., Wood, Brent, Devidas, Meenakshi, Harris, Marian H., Silverman, Lewis B., Sallan, Stephen E., Gutierrez, Alejandro
Publicado 2018

Genomic landscape of high-grade meningiomas

por Bi, Wenya Linda, Greenwald, Noah F., Abedalthagafi, Malak, Wala, Jeremiah, Gibson, Will J., Agarwalla, Pankaj K., Horowitz, Peleg, Schumacher, Steven E., Esaulova, Ekaterina, Mei, Yu, Chevalier, Aaron, A. Ducar, Matthew, Thorner, Aaron R., van Hummelen, Paul, O. Stemmer-Rachamimov, Anat, Artyomov, Maksym, Al-Mefty, Ossama, Dunn, Gavin P., Santagata, Sandro, Dunn, Ian F., Beroukhim, Rameen
Publicado 2017

Erratum: Genomic landscape of high-grade meningiomas

por Bi, Wenya Linda, Greenwald, Noah F., Abedalthagafi, Malak, Wala, Jeremiah, Gibson, Will J., Agarwalla, Pankaj K., Horowitz, Peleg, Schumacher, Steven E., Esaulova, Ekaterina, Mei, Yu, Chevalier, Aaron, A. Ducar, Matthew, Thorner, Aaron R., van Hummelen, Paul, O. Stemmer-Rachamimov, Anat, Artyomov, Maksym, Al-Mefty, Ossama, Dunn, Gavin P., Santagata, Sandro, Dunn, Ian F., Beroukhim, Rameen
Publicado 2017

Dissection of PIK3CA Aberration for Cervical Adenocarcinoma Outcomes

por Chung, Tony K. H., Doran, Graeme, Cheung, Tak-Hong, Yim, So-Fan, Yu, Mei-Yung, Worley, Michael J., Elias, Kevin M., Thorner, Aaron R., Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I., Lau, Kei-Man, Ducar, Matthew D., Wong, Raymond R. Y., Wang, Vivian W., Nag, Anwesha, Wollison, Bruce M., Dalgarno, Audrey, Lee, Jacqueline H. S., Yeung, Suet-Ying, Wong, Lo, Horowitz, Neil S., Davis, Michelle R., Leung, Shuk-On A., Mu, Yi, Mok, Samuel C., Chan, Paul K. S., Lawrence, Michael S., Crum, Christopher P., Chiu, Rossa W. K., Berkowitz, Ross S., Wong, Yick-Fu
Publicado 2021

MYB-QKI rearrangements in Angiocentric Glioma drive tumorigenicity through a tripartite mechanism

por Bandopadhayay, Pratiti, Ramkissoon, Lori A., Jain, Payal, Bergthold, Guillaume, Wala, Jeremiah, Zeid, Rhamy, Schumacher, Steven E., Urbanski, Laura, O’Rourke, Ryan, Gibson, William J., Pelton, Kristine, Ramkissoon, Shakti H., Han, Harry J., Zhu, Yuankun, Choudhari, Namrata, Silva, Amanda, Boucher, Katie, Henn, Rosemary E., Kang, Yun Jee, Knoff, David, Paolella, Brenton R., Gladden-Young, Adrianne, Varlet, Pascale, Pages, Melanie, Horowitz, Peleg M., Federation, Alexander, Malkin, Hayley, Tracy, Adam, Seepo, Sara, Ducar, Matthew, Hummelen, Paul Van, Santi, Mariarita, Buccoliero, Anna Maria, Scagnet, Mirko, Bowers, Daniel C., Giannini, Caterina, Puget, Stephanie, Hawkins, Cynthia, Tabori, Uri, Klekner, Almos, Bognar, Laszlo, Burger, Peter C., Eberhart, Charles, Rodriguez, Fausto J., Hill, D. Ashley, Mueller, Sabine, Haas-Kogan, Daphne A., Phillips, Joanna J., Santagata, Sandro, Stiles, Charles D., Bradner, James E., Jabado, Nada, Goren, Alon, Grill, Jacques, Ligon, Azra H., Goumnerova, Liliana, Waanders, Angela J., Storm, Phillip B., Kieran, Mark W., Ligon, Keith L., Beroukhim, Rameen, Resnick, Adam C.
Publicado 2016