The Impacts of Low Diversity Sequence Data on Phylodynamic Inference during an Emerging Epidemic

por Lam, Anthony, Duchene, Sebastian
Publicado 2021

Real-Time and Remote MCMC Trace Inspection with Beastiary

por Wirth, Wytamma, Duchene, Sebastian
Publicado 2022

Estimating evolutionary rates in giant viruses using ancient genomes

por Duchêne, Sebastián, Holmes, Edward C
Publicado 2018

Can Sequence Phylogenies Safely Infer the Origin of the Global Virome?

por Holmes, Edward C., Duchêne, Sebastián
Publicado 2019

Detecting Episodic Evolution through Bayesian Inference of Molecular Clock Models

por Tay, John H, Baele, Guy, Duchene, Sebastian
Publicado 2023

Decoding the Fundamental Drivers of Phylodynamic Inference

por Featherstone, Leo A, Duchene, Sebastian, Vaughan, Timothy G
Publicado 2023

Declining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution models

por Duchêne, Sebastián, Ho, Simon YW, Holmes, Edward C
Publicado 2015

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families

por Geoghegan, Jemma L., Duchêne, Sebastián, Holmes, Edward C.
Publicado 2017

The molecular clock of Mycobacterium tuberculosis

por Menardo, Fabrizio, Duchêne, Sebastian, Brites, Daniela, Gagneux, Sebastien
Publicado 2019

Phytest: quality control for phylogenetic analyses

por Wirth, Wytamma, Mutch, Simon, Turnbull, Robert, Duchene, Sebastian
Publicado 2022

Differences in Performance among Test Statistics for Assessing Phylogenomic Model Adequacy

por Duchêne, David A, Duchêne, Sebastian, Ho, Simon Y W
Publicado 2018

SNPPar: identifying convergent evolution and other homoplasies from microbial whole-genome alignments

por Edwards, David J., Duchene, Sebastián, Pope, Bernard, Holt, Kathryn E.
Publicado 2021

The Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate

por Tay, John H, Porter, Ashleigh F, Wirth, Wytamma, Duchene, Sebastian
Publicado 2022

The impacts of drift and selection on genomic evolution in insects

por Tong, K. Jun, Duchêne, Sebastián, Lo, Nathan, Ho, Simon Y.W.
Publicado 2017

The Asian Lineage of Zika Virus: Transmission and Evolution in Asia and the Americas

por Hu, Tao, Li, Juan, Carr, Michael J., Duchêne, Sebastián, Shi, Weifeng
Publicado 2019

Epidemiological inference from pathogen genomes: A review of phylodynamic models and applications

por Featherstone, Leo A, Zhang, Joshua M, Vaughan, Timothy G, Duchene, Sebastian
Publicado 2022

Mitogenome Phylogenetics: The Impact of Using Single Regions and Partitioning Schemes on Topology, Substitution Rate and Divergence Time Estimation

por Duchêne, Sebastián, Archer, Frederick I., Vilstrup, Julia, Caballero, Susana, Morin, Phillip A.
Publicado 2011

Initial Evidence for Adaptive Selection on the NADH Subunit Two of Freshwater Dolphins by Analyses of Mitochondrial Genomes

por Caballero, Susana, Duchêne, Sebastian, Garavito, Manuel F., Slikas, Beth, Baker, C. Scott
Publicado 2015

Highly Divergent Dengue Virus Type 2 in Traveler Returning from Borneo to Australia

por Liu, Wenjun, Pickering, Paul, Duchêne, Sebastián, Holmes, Edward C., Aaskov, John G.
Publicado 2016

Phylodynamic Model Adequacy Using Posterior Predictive Simulations

por Duchene, Sebastian, Bouckaert, Remco, Duchene, David A, Stadler, Tanja, Drummond, Alexei J
Publicado 2019