localpdb—a Python package to manage protein structures and their annotations

por Ludwiczak, Jan, Winski, Aleksander, Dunin-Horkawicz, Stanislaw
Publicado 2022

Phylogenomic analysis of the GIY-YIG nuclease superfamily

por Dunin-Horkawicz, Stanislaw, Feder, Marcin, Bujnicki, Janusz M
Publicado 2006

The Structure and Topology of α-Helical Coiled Coils

por Lupas, Andrei N., Bassler, Jens, Dunin-Horkawicz, Stanislaw
Publicado 2017

pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models

por Kaminski, Kamil, Ludwiczak, Jan, Pawlicki, Kamil, Alva, Vikram, Dunin-Horkawicz, Stanislaw
Publicado 2023

Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases

por Tkaczuk, Karolina L, Dunin-Horkawicz, Stanislaw, Purta, Elzbieta, Bujnicki, Janusz M
Publicado 2007

Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes

por Machnicka, Magdalena A., Kaminska, Katarzyna H., Dunin-Horkawicz, Stanislaw, Bujnicki, Janusz M.
Publicado 2015

Loss of Conserved Noncoding RNAs in Genomes of Bacterial Endosymbionts

por Matelska, Dorota, Kurkowska, Malgorzata, Purta, Elzbieta, Bujnicki, Janusz M., Dunin-Horkawicz, Stanislaw
Publicado 2016

Siah-1-interacting protein regulates mutated huntingtin protein aggregation in Huntington’s disease models

por Latoszek, Ewelina, Wiweger, Małgorzata, Ludwiczak, Jan, Dunin-Horkawicz, Stanisław, Kuznicki, Jacek, Czeredys, Magdalena
Publicado 2022

RRMdb—an evolutionary-oriented database of RNA recognition motif sequences

por Nowacka, Martyna, Boccaletto, Pietro, Jankowska, Elzbieta, Jarzynka, Tomasz, Bujnicki, Janusz M, Dunin-Horkawicz, Stanislaw
Publicado 2019

Self-analysis of repeat proteins reveals evolutionarily conserved patterns

por Merski, Matthew, Młynarczyk, Krzysztof, Ludwiczak, Jan, Skrzeczkowski, Jakub, Dunin-Horkawicz, Stanisław, Górna, Maria W.
Publicado 2020

A library of coiled-coil domains: from regular bundles to peculiar twists

por Szczepaniak, Krzysztof, Bukala, Adriana, da Silva Neto, Antonio Marinho, Ludwiczak, Jan, Dunin-Horkawicz, Stanislaw
Publicado 2020

Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts

por Smug, Bogna J., Szczepaniak, Krzysztof, Rocha, Eduardo P. C., Dunin-Horkawicz, Stanislaw, Mostowy, Rafał J.
Publicado 2023

MODOMICS: a database of RNA modification pathways

por Dunin-Horkawicz, Stanislaw, Czerwoniec, Anna, Gajda, Michal J., Feder, Marcin, Grosjean, Henri, Bujnicki, Janusz M.
Publicado 2006

S6:S18 ribosomal protein complex interacts with a structural motif present in its own mRNA

por Matelska, Dorota, Purta, Elzbieta, Panek, Sylwia, Boniecki, Michal J., Bujnicki, Janusz M., Dunin-Horkawicz, Stanislaw
Publicado 2013

Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins

por Kamiński, Kamil, Ludwiczak, Jan, Jasiński, Maciej, Bukala, Adriana, Madaj, Rafal, Szczepaniak, Krzysztof, Dunin-Horkawicz, Stanisław
Publicado 2021

Delineation of structural domains and identification of functionally important residues in DNA repair enzyme exonuclease VII

por Poleszak, Katarzyna, Kaminska, Katarzyna H., Dunin-Horkawicz, Stanislaw, Lupas, Andrei, Skowronek, Krzysztof J., Bujnicki, Janusz M.
Publicado 2012

PiPred – a deep-learning method for prediction of π-helices in protein sequences

por Ludwiczak, Jan, Winski, Aleksander, da Silva Neto, Antonio Marinho, Szczepaniak, Krzysztof, Alva, Vikram, Dunin-Horkawicz, Stanislaw
Publicado 2019

Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor

por Zayats, Vasilina, Perlinska, Agata P., Jarmolinska, Aleksandra I., Jastrzebski, Borys, Dunin-Horkawicz, Stanislaw, Sulkowska, Joanna I.
Publicado 2021

The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification

por Majorek, Karolina A., Dunin-Horkawicz, Stanislaw, Steczkiewicz, Kamil, Muszewska, Anna, Nowotny, Marcin, Ginalski, Krzysztof, Bujnicki, Janusz M.
Publicado 2014

The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase

por Purta, Elzbieta, van Vliet, Françoise, Tkaczuk, Karolina L, Dunin-Horkawicz, Stanislaw, Mori, Hirotada, Droogmans, Louis, Bujnicki, Janusz M
Publicado 2006