Continuous lifelong learning for modeling of gene regulation from single cell multiome data by leveraging atlas-scale external data

por Yuan, Qiuyue, Duren, Zhana
Publicado 2023

A systematic method to identify modulation of transcriptional regulation via chromatin activity reveals regulatory network during mESC differentiation

por Duren, Zhana, Wang, Yong
Publicado 2016

Integration of single-cell multi-omics data by regression analysis on unpaired observations

por Yuan, Qiuyue, Duren, Zhana
Publicado 2022

Modeling regulatory network topology improves genome-wide analyses of complex human traits

por Zhu, Xiang, Duren, Zhana, Wong, Wing Hung
Publicado 2021

GuidingNet: revealing transcriptional cofactor and predicting binding for DNA methyltransferase by network regularization

por Ren, Lixin, Gao, Caixia, Duren, Zhana, Wang, Yong
Publicado 2020

Human Genetic Variants Associated with COVID-19 Severity are Enriched in Immune and Epithelium Regulatory Networks

por Feng, Zhanying, Ren, Xianwen, Duren, Zhana, Wang, Yong
Publicado 2022

A method for scoring the cell type-specific impacts of noncoding variants in personal genomes

por Li, Wenran, Duren, Zhana, Jiang, Rui, Wong, Wing Hung
Publicado 2020

Time course regulatory analysis based on paired expression and chromatin accessibility data

por Duren, Zhana, Chen, Xi, Xin, Jingxue, Wang, Yong, Wong, Wing Hung
Publicado 2020

DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data

por Zeng, Wanwen, Chen, Xi, Duren, Zhana, Wang, Yong, Jiang, Rui, Wong, Wing Hung
Publicado 2019

Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG

por Duren, Zhana, Chang, Fengge, Naqing, Fnu, Xin, Jingxue, Liu, Qiao, Wong, Wing Hung
Publicado 2022

Author Correction: Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG

por Duren, Zhana, Chang, Fengge, Naqing, Fnu, Xin, Jingxue, Liu, Qiao, Wong, Wing Hung
Publicado 2022

hReg-CNCC reconstructs a regulatory network in human cranial neural crest cells and annotates variants in a developmental context

por Feng, Zhanying, Duren, Zhana, Xiong, Ziyi, Wang, Sijia, Liu, Fan, Wong, Wing Hung, Wang, Yong
Publicado 2021

MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting

por Zou, Meng, Duren, Zhana, Yuan, Qiuyue, Li, Henry, Hutchins, Andrew Paul, Wong, Wing Hung, Wang, Yong
Publicado 2021

Heritability enrichment in context-specific regulatory networks improves phenotype-relevant tissue identification

por Feng, Zhanying, Duren, Zhana, Xin, Jingxue, Yuan, Qiuyue, He, Yaoxi, Su, Bing, Wong, Wing Hung, Wang, Yong
Publicado 2022

Unsupervised clustering and epigenetic classification of single cells

por Zamanighomi, Mahdi, Lin, Zhixiang, Daley, Timothy, Chen, Xi, Duren, Zhana, Schep, Alicia, Greenleaf, William J., Wong, Wing Hung
Publicado 2018

Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations

por Duren, Zhana, Chen, Xi, Zamanighomi, Mahdi, Zeng, Wanwen, Satpathy, Ansuman T., Chang, Howard Y., Wang, Yong, Wong, Wing Hung
Publicado 2018

Hierarchical graphical model reveals HFR1 bridging circadian rhythm and flower development in Arabidopsis thaliana

por Duren, Zhana, Wang, Yaling, Wang, Jiguang, Zhao, Xing-Ming, Lv, Le, Li, Xiaobo, Liu, Jingdong, Zhu, Xin-Guang, Chen, Luonan, Wang, Yong
Publicado 2019

Sc-compReg enables the comparison of gene regulatory networks between conditions using single-cell data

por Duren, Zhana, Lu, Wenhui Sophia, Arthur, Joseph G., Shah, Preyas, Xin, Jingxue, Meschi, Francesca, Li, Miranda Lin, Nemec, Corey M., Yin, Yifeng, Wong, Wing Hung
Publicado 2021

Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage

por Zhang, Xianglong, Hong, David, Ma, Shining, Ward, Thomas, Ho, Marcus, Pattni, Reenal, Duren, Zhana, Stankov, Atanas, Bade Shrestha, Sharon, Hallmayer, Joachim, Wong, Wing Hung, Reiss, Allan L., Urban, Alexander E.
Publicado 2020

Dynamic chromatin regulatory landscape of human CAR T cell exhaustion

por Gennert, David G., Lynn, Rachel C., Granja, Jeff M., Weber, Evan W., Mumbach, Maxwell R., Zhao, Yang, Duren, Zhana, Sotillo, Elena, Greenleaf, William J., Wong, Wing H., Satpathy, Ansuman T., Mackall, Crystal L., Chang, Howard Y.
Publicado 2021