Matrix prior for data transfer between single cell data types in latent Dirichlet allocation

por Min, Alan, Durham, Timothy, Gevirtzman, Louis, Noble, William Stafford
Publicado 2023

Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome

por Schreiber, Jacob, Durham, Timothy, Bilmes, Jeffrey, Noble, William Stafford
Publicado 2020

Author Correction: Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome

por Schreiber, Jacob, Durham, Timothy, Bilmes, Jeffrey, Noble, William Stafford
Publicado 2021

Functional characterization of enhancer evolution in the primate lineage

por Klein, Jason C., Keith, Aidan, Agarwal, Vikram, Durham, Timothy, Shendure, Jay
Publicado 2018

PREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition

por Durham, Timothy J., Libbrecht, Maxwell W., Howbert, J. Jeffry, Bilmes, Jeff, Noble, William Stafford
Publicado 2018

Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

por Durham, Timothy J., Daza, Riza M., Gevirtzman, Louis, Cusanovich, Darren A., Bolonduro, Olubusayo, Noble, William Stafford, Shendure, Jay, Waterston, Robert H.
Publicado 2021

Hypoxia extends lifespan and neurological function in a mouse model of aging

por Rogers, Robert S., Wang, Hong, Durham, Timothy J., Stefely, Jonathan A., Owiti, Norah A., Markhard, Andrew L., Sandler, Lev, To, Tsz-Leung, Mootha, Vamsi K.
Publicado 2023

Nuclear genetic control of mtDNA copy number and heteroplasmy in humans

por Gupta, Rahul, Kanai, Masahiro, Durham, Timothy J., Tsuo, Kristin, McCoy, Jason G., Chinnery, Patrick F., Karczewski, Konrad J., Calvo, Sarah E., Neale, Benjamin M., Mootha, Vamsi K.
Publicado 2023

Systematic analysis of chromatin state dynamics in nine human cell types

por Ernst, Jason, Kheradpour, Pouya, Mikkelsen, Tarjei S., Shoresh, Noam, Ward, Lucas D., Epstein, Charles B., Zhang, Xiaolan, Wang, Li, Issner, Robbyn, Coyne, Michael, Ku, Manching, Durham, Timothy, Kellis, Manolis, Bernstein, Bradley E.
Publicado 2011

Nuclear genetic control of mtDNA copy number and heteroplasmy in humans

por Gupta, Rahul, Kanai, Masahiro, Durham, Timothy J., Tsuo, Kristin, McCoy, Jason G., Kotrys, Anna V., Zhou, Wei, Chinnery, Patrick F., Karczewski, Konrad J., Calvo, Sarah E., Neale, Benjamin M., Mootha, Vamsi K.
Publicado 2023

CMPF, a Metabolite Formed Upon Prescription Omega-3-Acid Ethyl Ester Supplementation, Prevents and Reverses Steatosis

por Prentice, Kacey J., Wendell, Stacy G., Liu, Ying, Eversley, Judith A., Salvatore, Sonia R., Mohan, Haneesha, Brandt, Sydney L., Adams, Andrew C., Serena Wang, X., Wei, David, FitzGerald, Garret A., Durham, Timothy B., Hammond, Craig D., Sloop, Kyle W., Skarke, Carsten, Schopfer, Francisco J., Wheeler, Michael B.
Publicado 2017

Characterization of a novel AICARFT inhibitor which potently elevates ZMP and has anti-tumor activity in murine models

por Brooks, Harold B., Meier, Timothy I., Geeganage, Sandaruwan, Fales, Kevin R., Thrasher, Kenneth J., Konicek, Susan A., Spencer, Charles D., Thibodeaux, Stefan, Foreman, Robert T., Hui, Yu-Hua, Roth, Kenneth D., Qian, Yue-Wei, Wang, Tao, Luo, Shuang, Torrado, Alicia, Si, Chong, Toth, James L., Mc Cowan, Jefferson R., Frimpong, Kwame, Lee, Matthew R., Dally, Robert D., Shepherd, Timothy A., Durham, Timothy B., Wang, Yong, Wu, Zhipei, Iversen, Philip W., Njoroge, F. George
Publicado 2018

MitoCarta3.0: an updated mitochondrial proteome now with sub-organelle localization and pathway annotations

por Rath, Sneha, Sharma, Rohit, Gupta, Rahul, Ast, Tslil, Chan, Connie, Durham, Timothy J, Goodman, Russell P, Grabarek, Zenon, Haas, Mary E, Hung, Wendy H W, Joshi, Pallavi R, Jourdain, Alexis A, Kim, Sharon H, Kotrys, Anna V, Lam, Stephanie S, McCoy, Jason G, Meisel, Joshua D, Miranda, Maria, Panda, Apekshya, Patgiri, Anupam, Rogers, Robert, Sadre, Shayan, Shah, Hardik, Skinner, Owen S, To, Tsz-Leung, Walker, Melissa A, Wang, Hong, Ward, Patrick S, Wengrod, Jordan, Yuan, Chen-Ching, Calvo, Sarah E, Mootha, Vamsi K
Publicado 2020