Long term persistence of clonal malaria parasite Plasmodium falciparum lineages in the Colombian Pacific region

por Echeverry, Diego F, Nair, Shalini, Osorio, Lyda, Menon, Sanjay, Murillo, Claribel, Anderson, Tim JC
Publicado 2013

Identity-by-descent with uncertainty characterises connectivity of Plasmodium falciparum populations on the Colombian-Pacific coast

por Taylor, Aimee R., Echeverry, Diego F., Anderson, Timothy J. C., Neafsey, Daniel E., Buckee, Caroline O.
Publicado 2020

From contigs towards chromosomes: automatic improvement of long read assemblies (ILRA)

por Ruiz, José Luis, Reimering, Susanne, Escobar-Prieto, Juan David, Brancucci, Nicolas M B, Echeverry, Diego F, Abdi, Abdirahman I, Marti, Matthias, Gómez-Díaz, Elena, Otto, Thomas D
Publicado 2023

Human malaria diagnosis using a single-step direct-PCR based on the Plasmodium cytochrome oxidase III gene

por Echeverry, Diego F., Deason, Nicholas A., Davidson, Jenna, Makuru, Victoria, Xiao, Honglin, Niedbalski, Julie, Kern, Marcia, Russell, Tanya L., Burkot, Thomas R., Collins, Frank H., Lobo, Neil F.
Publicado 2016

Resolving drug selection and migration in an inbred South American Plasmodium falciparum population with identity-by-descent analysis

por Carrasquilla, Manuela, Early, Angela M., Taylor, Aimee R., Knudson Ospina, Angélica, Echeverry, Diego F., Anderson, Timothy J. C., Mancilla, Elvira, Aponte, Samanda, Cárdenas, Pablo, Buckee, Caroline O., Rayner, Julian C., Sáenz, Fabián E., Neafsey, Daniel E., Corredor, Vladimir
Publicado 2022

Fast and robust single PCR for Plasmodium sporozoite detection in mosquitoes using the cytochrome oxidase I gene

por Echeverry, Diego F., Deason, Nicholas A., Makuru, Victoria, Davidson, Jenna, Xiao, Honglin, Niedbalski, Julie, Yu, Xiaoyu, Stevenson, Jennifer C., Bugoro, Hugo, Aparaimo, Allan, Reuben, Hedrick, Cooper, Robert, Burkot, Thomas R., Russell, Tanya L., Collins, Frank H., Lobo, Neil F.
Publicado 2017

Genomics of Plasmodium vivax in Colombia reveals evidence of local bottle-necking and inter-country connectivity in the Americas

por Sutanto, Edwin, Pava, Zuleima, Echeverry, Diego F., Lopera-Mesa, Tatiana M., Montenegro, Lidia Madeline, Yasnot-Acosta, Maria F., Benavente, Ernest Diez, Pearson, Richard D., Herrera, Sócrates, Arévalo-Herrera, Myriam, Trimarsanto, Hidayat, Rumaseb, Angela, Noviyanti, Rintis, Kwiatkowski, Dominic P., Price, Ric N., Auburn, Sarah
Publicado 2023

Spatial-temporal heterogeneity in malaria receptivity is best estimated by vector biting rates in areas nearing elimination

por Burkot, Thomas R., Bugoro, Hugo, Apairamo, Allan, Cooper, Robert D., Echeverry, Diego F., Odabasi, Danyal, Beebe, Nigel W., Makuru, Victoria, Xiao, Honglin, Davidson, Jenna R., Deason, Nicholas A., Reuben, Hedrick, Kazura, James W., Collins, Frank H., Lobo, Neil F., Russell, Tanya L.
Publicado 2018

Global sequence variation in the histidine-rich proteins 2 and 3 of Plasmodium falciparum: implications for the performance of malaria rapid diagnostic tests

por Baker, Joanne, Ho, Mei-Fong, Pelecanos, Anita, Gatton, Michelle, Chen, Nanhua, Abdullah, Salim, Albertini, Audrey, Ariey, Frederic, Barnwell, John, Bell, David, Cunningham, Jane, Djalle, Djibrine, Echeverry, Diego F, Gamboa, Dionicia, Hii, Jeffery, Kyaw, Myat Phone, Luchavez, Jennifer, Membi, Christopher, Menard, Didier, Murillo, Claribel, Nhem, Sina, Ogutu, Bernhards, Onyor, Pamela, Oyibo, Wellington, Wang, Shan Qing, McCarthy, James, Cheng, Qin
Publicado 2010

A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains

por Preston, Mark D., Campino, Susana, Assefa, Samuel A., Echeverry, Diego F., Ocholla, Harold, Amambua-Ngwa, Alfred, Stewart, Lindsay B., Conway, David J., Borrmann, Steffen, Michon, Pascal, Zongo, Issaka, Ouédraogo, Jean-Bosco, Djimde, Abdoulaye A., Doumbo, Ogobara K., Nosten, Francois, Pain, Arnab, Bousema, Teun, Drakeley, Chris J., Fairhurst, Rick M., Sutherland, Colin J., Roper, Cally, Clark, Taane G.
Publicado 2014

A molecular barcode and web-based data analysis tool to identify imported Plasmodium vivax malaria

por Trimarsanto, Hidayat, Amato, Roberto, Pearson, Richard D., Sutanto, Edwin, Noviyanti, Rintis, Trianty, Leily, Marfurt, Jutta, Pava, Zuleima, Echeverry, Diego F., Lopera-Mesa, Tatiana M., Montenegro, Lidia M., Tobón-Castaño, Alberto, Grigg, Matthew J., Barber, Bridget, William, Timothy, Anstey, Nicholas M., Getachew, Sisay, Petros, Beyene, Aseffa, Abraham, Assefa, Ashenafi, Rahim, Awab G., Chau, Nguyen H., Hien, Tran T., Alam, Mohammad S., Khan, Wasif A., Ley, Benedikt, Thriemer, Kamala, Wangchuck, Sonam, Hamedi, Yaghoob, Adam, Ishag, Liu, Yaobao, Gao, Qi, Sriprawat, Kanlaya, Ferreira, Marcelo U., Laman, Moses, Barry, Alyssa, Mueller, Ivo, Lacerda, Marcus V. G., Llanos-Cuentas, Alejandro, Krudsood, Srivicha, Lon, Chanthap, Mohammed, Rezika, Yilma, Daniel, Pereira, Dhelio B., Espino, Fe E. J., Chu, Cindy S., Vélez, Iván D., Namaik-larp, Chayadol, Villegas, Maria F., Green, Justin A., Koh, Gavin, Rayner, Julian C., Drury, Eleanor, Gonçalves, Sónia, Simpson, Victoria, Miotto, Olivo, Miles, Alistair, White, Nicholas J., Nosten, Francois, Kwiatkowski, Dominic P., Price, Ric N., Auburn, Sarah
Publicado 2022

An open dataset of Plasmodium vivax genome variation in 1,895 worldwide samples

por Adam, Ishag, Alam, Mohammad Shafiul, Alemu, Sisay, Amaratunga, Chanaki, Amato, Roberto, Andrianaranjaka, Voahangy, Anstey, Nicholas M, Aseffa, Abraham, Ashley, Elizabeth, Assefa, Ashenafi, Auburn, Sarah, Barber, Bridget E, Barry, Alyssa, Batista Pereira, Dhelio, Cao, Jun, Chau, Nguyen Hoang, Chotivanich, Kesinee, Chu, Cindy, Dondorp, Arjen M., Drury, Eleanor, Echeverry, Diego F., Erko, Berhanu, Espino, Fe, Fairhurst, Rick, Faiz, Abdul, Fernanda Villegas, María, Gao, Qi, Golassa, Lemu, Goncalves, Sonia, Grigg, Matthew J, Hamedi, Yaghoob, Hien, Tran Tinh, Htut, Ye, Johnson, Kimberly J, Karunaweera, Nadira, Khan, Wasif, Krudsood, Srivicha, Kwiatkowski, Dominic P, Lacerda, Marcus, Ley, Benedikt, Lim, Pharath, Liu, Yaobao, Llanos-Cuentas, Alejandro, Lon, Chanthap, Lopera-Mesa, Tatiana, Marfurt, Jutta, Michon, Pascal, Miotto, Olivo, Mohammed, Rezika, Mueller, Ivo, Namaik-larp, Chayadol, Newton, Paul N, Nguyen, Thuy-Nhien, Nosten, Francois, Noviyanti, Rintis, Pava, Zuleima, Pearson, Richard D, Petros, Beyene, Phyo, Aung P, Price, Ric N, Pukrittayakamee, Sasithon, Rahim, Awab Ghulam, Randrianarivelojosia, Milijaona, Rayner, Julian C, Rumaseb, Angela, Siegel, Sasha V, Simpson, Victoria J, Thriemer, Kamala, Tobon-Castano, Alberto, Trimarsanto, Hidayat, Urbano Ferreira, Marcelo, Vélez, Ivan D, Wangchuk, Sonam, Wellems, Thomas E, White, Nicholas J, William, Timothy, Yasnot, Maria F, Yilma, Daniel
Publicado 2022

An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples

por Ahouidi, Ambroise, Ali, Mozam, Almagro-Garcia, Jacob, Amambua-Ngwa, Alfred, Amaratunga, Chanaki, Amato, Roberto, Amenga-Etego, Lucas, Andagalu, Ben, Anderson, Tim J. C., Andrianaranjaka, Voahangy, Apinjoh, Tobias, Ariani, Cristina, Ashley, Elizabeth A, Auburn, Sarah, Awandare, Gordon A., Ba, Hampate, Baraka, Vito, Barry, Alyssa E., Bejon, Philip, Bertin, Gwladys I., Boni, Maciej F., Borrmann, Steffen, Bousema, Teun, Branch, Oralee, Bull, Peter C., Busby, George B. J., Chookajorn, Thanat, Chotivanich, Kesinee, Claessens, Antoine, Conway, David, Craig, Alister, D'Alessandro, Umberto, Dama, Souleymane, Day, Nicholas PJ, Denis, Brigitte, Diakite, Mahamadou, Djimdé, Abdoulaye, Dolecek, Christiane, Dondorp, Arjen M, Drakeley, Chris, Drury, Eleanor, Duffy, Patrick, Echeverry, Diego F., Egwang, Thomas G., Erko, Berhanu, Fairhurst, Rick M., Faiz, Abdul, Fanello, Caterina A., Fukuda, Mark M., Gamboa, Dionicia, Ghansah, Anita, Golassa, Lemu, Goncalves, Sonia, Hamilton, William L., Harrison, G. L. Abby, Hart, Lee, Henrichs, Christa, Hien, Tran Tinh, Hill, Catherine A., Hodgson, Abraham, Hubbart, Christina, Imwong, Mallika, Ishengoma, Deus S., Jackson, Scott A., Jacob, Chris G., Jeffery, Ben, Jeffreys, Anna E., Johnson, Kimberly J., Jyothi, Dushyanth, Kamaliddin, Claire, Kamau, Edwin, Kekre, Mihir, Kluczynski, Krzysztof, Kochakarn, Theerarat, Konaté, Abibatou, Kwiatkowski, Dominic P., Kyaw, Myat Phone, Lim, Pharath, Lon, Chanthap, Loua, Kovana M., Maïga-Ascofaré, Oumou, Malangone, Cinzia, Manske, Magnus, Marfurt, Jutta, Marsh, Kevin, Mayxay, Mayfong, Miles, Alistair, Miotto, Olivo, Mobegi, Victor, Mokuolu, Olugbenga A., Montgomery, Jacqui, Mueller, Ivo, Newton, Paul N., Nguyen, Thuy, Nguyen, Thuy-Nhien, Noedl, Harald, Nosten, Francois, Noviyanti, Rintis, Nzila, Alexis, Ochola-Oyier, Lynette I., Ocholla, Harold, Oduro, Abraham, Omedo, Irene, Onyamboko, Marie A., Ouedraogo, Jean-Bosco, Oyebola, Kolapo, Pearson, Richard D., Peshu, Norbert, Phyo, Aung Pyae, Plowe, Chris V., Price, Ric N., Pukrittayakamee, Sasithon, Randrianarivelojosia, Milijaona, Rayner, Julian C., Ringwald, Pascal, Rockett, Kirk A., Rowlands, Katherine, Ruiz, Lastenia, Saunders, David, Shayo, Alex, Siba, Peter, Simpson, Victoria J., Stalker, Jim, Su, Xin-zhuan, Sutherland, Colin, Takala-Harrison, Shannon, Tavul, Livingstone, Thathy, Vandana, Tshefu, Antoinette, Verra, Federica, Vinetz, Joseph, Wellems, Thomas E., Wendler, Jason, White, Nicholas J., Wright, Ian, Yavo, William, Ye, Htut
Publicado 2021

Pf7: an open dataset of Plasmodium falciparum genome variation in 20,000 worldwide samples

por Abdel Hamid, Muzamil Mahdi, Abdelraheem, Mohamed Hassan, Acheampong, Desmond Omane, Ahouidi, Ambroise, Ali, Mozam, Almagro-Garcia, Jacob, Amambua-Ngwa, Alfred, Amaratunga, Chanaki, Amenga-Etego, Lucas, Andagalu, Ben, Anderson, Tim, Andrianaranjaka, Voahangy, Aniebo, Ifeyinwa, Aninagyei, Enoch, Ansah, Felix, Ansah, Patrick O, Apinjoh, Tobias, Arnaldo, Paulo, Ashley, Elizabeth, Auburn, Sarah, Awandare, Gordon A, Ba, Hampate, Baraka, Vito, Barry, Alyssa, Bejon, Philip, Bertin, Gwladys I, Boni, Maciej F, Borrmann, Steffen, Bousema, Teun, Bouyou-Akotet, Marielle, Branch, Oralee, Bull, Peter C, Cheah, Huch, Chindavongsa, Keobouphaphone, Chookajorn, Thanat, Chotivanich, Kesinee, Claessens, Antoine, Conway, David J, Corredor, Vladimir, Courtier, Erin, Craig, Alister, D'Alessandro, Umberto, Dama, Souleymane, Day, Nicholas, Denis, Brigitte, Dhorda, Mehul, Diakite, Mahamadou, Djimde, Abdoulaye, Dolecek, Christiane, Dondorp, Arjen, Doumbia, Seydou, Drakeley, Chris, Drury, Eleanor, Duffy, Patrick, Echeverry, Diego F, Egwang, Thomas G, Enosse, Sonia Maria Mauricio, Erko, Berhanu, Fairhurst, Rick M., Faiz, Abdul, Fanello, Caterina A, Fleharty, Mark, Forbes, Matthew, Fukuda, Mark, Gamboa, Dionicia, Ghansah, Anita, Golassa, Lemu, Goncalves, Sonia, Harrison, G L Abby, Healy, Sara Anne, Hendry, Jason A, Hernandez-Koutoucheva, Anastasia, Hien, Tran Tinh, Hill, Catherine A, Hombhanje, Francis, Hott, Amanda, Htut, Ye, Hussein, Mazza, Imwong, Mallika, Ishengoma, Deus, Jackson, Scott A, Jacob, Chris G, Jeans, Julia, Johnson, Kimberly J, Kamaliddin, Claire, Kamau, Edwin, Keatley, Jon, Kochakarn, Theerarat, Konate, Drissa S, Konaté, Abibatou, Kone, Aminatou, Kwiatkowski, Dominic P, Kyaw, Myat P, Kyle, Dennis, Lawniczak, Mara, Lee, Samuel K, Lemnge, Martha, Lim, Pharath, Lon, Chanthap, Loua, Kovana M, Mandara, Celine I, Marfurt, Jutta, Marsh, Kevin, Maude, Richard James, Mayxay, Mayfong, Maïga-Ascofaré, Oumou, Miotto, Olivo, Mita, Toshihiro, Mobegi, Victor, Mohamed, Abdelrahim Osman, Mokuolu, Olugbenga A, Montgomery, Jaqui, Morang’a, Collins Misita, Mueller, Ivo, Murie, Kathryn, Newton, Paul N, Ngo Duc, Thang, Nguyen, Thuy, Nguyen, Thuy-Nhien, Nguyen Thi Kim, Tuyen, Nguyen Van, Hong, Noedl, Harald, Nosten, Francois, Noviyanti, Rintis, Ntui, Vincent Ntui-Njock, Nzila, Alexis, Ochola-Oyier, Lynette Isabella, Ocholla, Harold, Oduro, Abraham, Omedo, Irene, Onyamboko, Marie A, Ouedraogo, Jean-Bosco, Oyebola, Kolapo, Oyibo, Wellington Aghoghovwia, Pearson, Richard, Peshu, Norbert, Phyo, Aung P, Plowe, Christopher V, Price, Ric N, Pukrittayakamee, Sasithon, Quang, Huynh Hong, Randrianarivelojosia, Milijaona, Rayner, Julian C, Ringwald, Pascal, Rosanas-Urgell, Anna, Rovira-Vallbona, Eduard, Ruano-Rubio, Valentin, Ruiz, Lastenia, Saunders, David, Shayo, Alex, Siba, Peter, Simpson, Victoria J, Sissoko, Mahamadou S., Smith, Christen, Su, Xin-zhuan, Sutherland, Colin, Takala-Harrison, Shannon, Talman, Arthur, Tavul, Livingstone, Thanh, Ngo Viet, Thathy, Vandana, Thu, Aung Myint, Toure, Mahamoudou, Tshefu, Antoinette, Verra, Federica, Vinetz, Joseph, Wellems, Thomas E, Wendler, Jason, White, Nicholas J, Whitton, Georgia, Yavo, William, van der Pluijm, Rob W
Publicado 2023