Using support vector machines to improve elemental ion identification in macromolecular crystal structures

por Morshed, Nader, Echols, Nathaniel, Adams, Paul D.
Publicado 2015

New Python-based methods for data processing

por Sauter, Nicholas K., Hattne, Johan, Grosse-Kunstleve, Ralf W., Echols, Nathaniel
Publicado 2013

Improved crystal orientation and physical properties from single-shot XFEL stills

por Sauter, Nicholas K., Hattne, Johan, Brewster, Aaron S., Echols, Nathaniel, Zwart, Petrus H., Adams, Paul D.
Publicado 2014

Phaser.MRage: automated molecular replacement

por Bunkóczi, Gábor, Echols, Nathaniel, McCoy, Airlie J., Oeffner, Robert D., Adams, Paul D., Read, Randy J.
Publicado 2013

Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement

por Headd, Jeffrey J., Echols, Nathaniel, Afonine, Pavel V., Moriarty, Nigel W., Gildea, Richard J., Adams, Paul D.
Publicado 2014

EMRinger: Side-chain-directed model and map validation for 3D Electron Cryomicroscopy

por Barad, Benjamin A, Echols, Nathaniel, Wang, Ray Yu-Ruei, Cheng, Yifan, DiMaio, Frank, Adams, Paul D, Fraser, James S
Publicado 2015

An atypical receiver domain controls the dynamic polar localization of the Myxococcus xanthus social motility protein FrzS

por Fraser, James S, Merlie, John P, Echols, Nathaniel, Weisfield, Shellie R, Mignot, Tâm, Wemmer, David E, Zusman, David R, Alber, Tom
Publicado 2007

Ligand placement based on prior structures: the guided ligand-replacement method

por Klei, Herbert E., Moriarty, Nigel W., Echols, Nathaniel, Terwilliger, Thomas C., Baldwin, Eric T., Pokross, Matt, Posy, Shana, Adams, Paul D.
Publicado 2013

The Database of Macromolecular Motions: new features added at the decade mark

por Flores, Samuel, Echols, Nathaniel, Milburn, Duncan, Hespenheide, Brandon, Keating, Kevin, Lu, Jason, Wells, Stephen, Yu, Eric Z., Thorpe, Michael, Gerstein, Mark
Publicado 2006

Macromolecular X-ray structure determination using weak single-wavelength anomalous data

por Bunkóczi, Gábor, McCoy, Airlie J., Echols, Nathaniel, Grosse-Kunstleve, Ralf W., Adams, Paul D., Holton, James M., Read, Randy J., Terwilliger, Thomas C.
Publicado 2014

Indexing amyloid peptide diffraction from serial femtosecond crystallography: new algorithms for sparse patterns

por Brewster, Aaron S., Sawaya, Michael R., Rodriguez, Jose, Hattne, Johan, Echols, Nathaniel, McFarlane, Heather T., Cascio, Duilio, Adams, Paul D., Eisenberg, David S., Sauter, Nicholas K.
Publicado 2015

Macro-to-Micro Structural Proteomics: Native Source Proteins for High-Throughput Crystallization

por Totir, Monica, Echols, Nathaniel, Nanao, Max, Gee, Christine L., Moskaleva, Alisa, Gradia, Scott, Iavarone, Anthony T., Berger, James M., May, Andrew P., Zubieta, Chloe, Alber, Tom
Publicado 2012

phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta

por Terwilliger, Thomas C., DiMaio, Frank, Read, Randy J., Baker, David, Bunkóczi, Gábor, Adams, Paul D., Grosse-Kunstleve, Ralf W., Afonine, Pavel V., Echols, Nathaniel
Publicado 2012

Automated identification of elemental ions in macromolecular crystal structures

por Echols, Nathaniel, Morshed, Nader, Afonine, Pavel V., McCoy, Airlie J., Miller, Mitchell D., Read, Randy J., Richardson, Jane S., Terwilliger, Thomas C., Adams, Paul D.
Publicado 2014

dxtbx: the diffraction experiment toolbox

por Parkhurst, James M., Brewster, Aaron S., Fuentes-Montero, Luis, Waterman, David G., Hattne, Johan, Ashton, Alun W., Echols, Nathaniel, Evans, Gwyndaf, Sauter, Nicholas K., Winter, Graeme
Publicado 2014

Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution

por Headd, Jeffrey J., Echols, Nathaniel, Afonine, Pavel V., Grosse-Kunstleve, Ralf W., Chen, Vincent B., Moriarty, Nigel W., Richardson, David C., Richardson, Jane S., Adams, Paul D.
Publicado 2012

Towards automated crystallographic structure refinement with phenix.refine

por Afonine, Pavel V., Grosse-Kunstleve, Ralf W., Echols, Nathaniel, Headd, Jeffrey J., Moriarty, Nigel W., Mustyakimov, Marat, Terwilliger, Thomas C., Urzhumtsev, Alexandre, Zwart, Peter H., Adams, Paul D.
Publicado 2012

Automating crystallographic structure solution and refinement of protein–ligand complexes

por Echols, Nathaniel, Moriarty, Nigel W., Klei, Herbert E., Afonine, Pavel V., Bunkóczi, Gábor, Headd, Jeffrey J., McCoy, Airlie J., Oeffner, Robert D., Read, Randy J., Terwilliger, Thomas C., Adams, Paul D.
Publicado 2013

Graphical tools for macromolecular crystallography in PHENIX

por Echols, Nathaniel, Grosse-Kunstleve, Ralf W., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Headd, Jeffrey J., McCoy, Airlie J., Moriarty, Nigel W., Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Adams, Paul D.
Publicado 2012

PHENIX: a comprehensive Python-based system for macromolecular structure solution

por Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Davis, Ian W., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Kapral, Gary J., Grosse-Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert, Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.
Publicado 2010