Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE

por Wang, Yuliang, Eddy, James A, Price, Nathan D
Publicado 2012

Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC)

por Eddy, James A., Hood, Leroy, Price, Nathan D., Geman, Donald
Publicado 2010

Mechanistic modeling of aberrant energy metabolism in human disease

por Sangar, Vineet, Eddy, James A., Simeonidis, Evangelos, Price, Nathan D.
Publicado 2012

Transcriptional Analysis of Aggressiveness and Heterogeneity across Grades of Astrocytomas

por Wang, Chunjing, Funk, Cory C., Eddy, James A., Price, Nathan D.
Publicado 2013

Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks

por Min Lee, Jong, Gianchandani, Erwin P., Eddy, James A., Papin, Jason A.
Publicado 2008

Correction: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks

por Lee, Jong Min, Gianchandani, Erwin P., Eddy, James A., Papin, Jason A.
Publicado 2008

Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major

por Chavali, Arvind K, Whittemore, Jeffrey D, Eddy, James A, Williams, Kyle T, Papin, Jason A
Publicado 2008

AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures

por Earls, John C, Eddy, James A, Funk, Cory C, Ko, Younhee, Magis, Andrew T, Price, Nathan D
Publicado 2013

Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

por Samal, Areejit, Craig, James P., Coradetti, Samuel T., Benz, J. Philipp, Eddy, James A., Price, Nathan D., Glass, N. Louise
Publicado 2017

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052

por Milne, Caroline B, Eddy, James A, Raju, Ravali, Ardekani, Soroush, Kim, Pan-Jun, Senger, Ryan S, Jin, Yong-Su, Blaschek, Hans P, Price, Nathan D
Publicado 2011

CRI iAtlas: an interactive portal for immuno-oncology research

por Eddy, James A., Thorsson, Vésteinn, Lamb, Andrew E., Gibbs, David L., Heimann, Carolina, Yu, Jia Xin, Chung, Verena, Chae, Yooree, Dang, Kristen, Vincent, Benjamin G., Shmulevich, Ilya, Guinney, Justin
Publicado 2020

Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges

por Ellrott, Kyle, Buchanan, Alex, Creason, Allison, Mason, Michael, Schaffter, Thomas, Hoff, Bruce, Eddy, James, Chilton, John M., Yu, Thomas, Stuart, Joshua M., Saez-Rodriguez, Julio, Stolovitzky, Gustavo, Boutros, Paul C., Guinney, Justin
Publicado 2019

Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database

por Clayton, Ashley, DeFelice, Mialy, Zalmanek, Brynn, Hodgson, Jay, Morin, Caroline, Simon, Stockard, Bletz, Julie A, Eddy, James A, Nikolov, Milen, Banerjee, Jineta, Vinnakota, Kalyan, Marasca, Marco, Boske, Kevin J, Hoff, Bruce, Bradic, Ljubomir, Kim, YooRi, Goss, James R, Allaway, Robert J
Publicado 2022

Large eQTL meta-analysis reveals differing patterns between cerebral cortical and cerebellar brain regions

por Sieberts, Solveig K., Perumal, Thanneer M., Carrasquillo, Minerva M., Allen, Mariet, Reddy, Joseph S., Hoffman, Gabriel E., Dang, Kristen K., Calley, John, Ebert, Philip J., Eddy, James, Wang, Xue, Greenwood, Anna K., Mostafavi, Sara, Omberg, Larsson, Peters, Mette A., Logsdon, Benjamin A., De Jager, Philip L., Ertekin-Taner, Nilüfer, Mangravite, Lara M.
Publicado 2020

Evaluation of software impact designed for biomedical research: Are we measuring what’s meaningful?

por Afiaz, Awan, Ivanov, Andrey A., Chamberlin, John, Hanauer, David, Savonen, Candace L., Goldman, Mary J., Morgan, Martin, Reich, Michael, Getka, Alexander, Holmes, Aaron, Pati, Sarthak, Knight, Dan, Boutros, Paul C., Bakas, Spyridon, Caporaso, J. Gregory, Del Fiol, Guilherme, Hochheiser, Harry, Haas, Brian, Schloss, Patrick D., Eddy, James A., Albrecht, Jake, Fedorov, Andrey, Waldron, Levi, Hoffman, Ava M., Bradshaw, Richard L., Leek, Jeffrey T., Wright, Carrie
Publicado 2023

The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)

por Li, Hongwei Bran, Conte, Gian Marco, Anwar, Syed Muhammad, Kofler, Florian, Ezhov, Ivan, van Leemput, Koen, Piraud, Marie, Diaz, Maria, Cole, Byrone, Calabrese, Evan, Rudie, Jeff, Meissen, Felix, Adewole, Maruf, Janas, Anastasia, Kazerooni, Anahita Fathi, LaBella, Dominic, Moawad, Ahmed W., Farahani, Keyvan, Eddy, James, Bergquist, Timothy, Chung, Verena, Shinohara, Russell Takeshi, Dako, Farouk, Wiggins, Walter, Reitman, Zachary, Wang, Chunhao, Liu, Xinyang, Jiang, Zhifan, Familiar, Ariana, Johanson, Elaine, Meier, Zeke, Davatzikos, Christos, Freymann, John, Kirby, Justin, Bilello, Michel, Fathallah-Shaykh, Hassan M., Wiest, Roland, Kirschke, Jan, Colen, Rivka R., Kotrotsou, Aikaterini, Lamontagne, Pamela, Marcus, Daniel, Milchenko, Mikhail, Nazeri, Arash, Weber, Marc-André, Mahajan, Abhishek, Mohan, Suyash, Mongan, John, Hess, Christopher, Cha, Soonmee, Villanueva-Meyer, Javier, Colak, Errol, Crivellaro, Priscila, Jakab, Andras, Albrecht, Jake, Anazodo, Udunna, Aboian, Mariam, Yu, Thomas, Chung, Verena, Bergquist, Timothy, Eddy, James, Albrecht, Jake, Baid, Ujjwal, Bakas, Spyridon, Linguraru, Marius George, Menze, Bjoern, Iglesias, Juan Eugenio, Wiestler, Benedikt
Publicado 2023

Human whole genome genotype and transcriptome data for Alzheimer’s and other neurodegenerative diseases

por Allen, Mariet, Carrasquillo, Minerva M., Funk, Cory, Heavner, Benjamin D., Zou, Fanggeng, Younkin, Curtis S., Burgess, Jeremy D., Chai, High-Seng, Crook, Julia, Eddy, James A., Li, Hongdong, Logsdon, Ben, Peters, Mette A., Dang, Kristen K., Wang, Xue, Serie, Daniel, Wang, Chen, Nguyen, Thuy, Lincoln, Sarah, Malphrus, Kimberly, Bisceglio, Gina, Li, Ma, Golde, Todd E., Mangravite, Lara M., Asmann, Yan, Price, Nathan D., Petersen, Ronald C., Graff-Radford, Neill R., Dickson, Dennis W., Younkin, Steven G., Ertekin-Taner, Nilüfer
Publicado 2016

The Brain Tumor Segmentation (BraTS) Challenge 2023: Glioma Segmentation in Sub-Saharan Africa Patient Population (BraTS-Africa)

por Adewole, Maruf, Rudie, Jeffrey D., Gbdamosi, Anu, Toyobo, Oluyemisi, Raymond, Confidence, Zhang, Dong, Omidiji, Olubukola, Akinola, Rachel, Suwaid, Mohammad Abba, Emegoakor, Adaobi, Ojo, Nancy, Aguh, Kenneth, Kalaiwo, Chinasa, Babatunde, Gabriel, Ogunleye, Afolabi, Gbadamosi, Yewande, Iorpagher, Kator, Calabrese, Evan, Aboian, Mariam, Linguraru, Marius, Albrecht, Jake, Wiestler, Benedikt, Kofler, Florian, Janas, Anastasia, LaBella, Dominic, Kzerooni, Anahita Fathi, Li, Hongwei Bran, Iglesias, Juan Eugenio, Farahani, Keyvan, Eddy, James, Bergquist, Timothy, Chung, Verena, Shinohara, Russell Takeshi, Wiggins, Walter, Reitman, Zachary, Wang, Chunhao, Liu, Xinyang, Jiang, Zhifan, Familiar, Ariana, Van Leemput, Koen, Bukas, Christina, Piraud, Maire, Conte, Gian-Marco, Johansson, Elaine, Meier, Zeke, Menze, Bjoern H, Baid, Ujjwal, Bakas, Spyridon, Dako, Farouk, Fatade, Abiodun, Anazodo, Udunna C
Publicado 2023

The Brain Tumor Segmentation (BraTS) Challenge 2023: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs)

por Kazerooni, Anahita Fathi, Khalili, Nastaran, Liu, Xinyang, Haldar, Debanjan, Jiang, Zhifan, Anwar, Syed Muhammed, Albrecht, Jake, Adewole, Maruf, Anazodo, Udunna, Anderson, Hannah, Bagheri, Sina, Baid, Ujjwal, Bergquist, Timothy, Borja, Austin J., Calabrese, Evan, Chung, Verena, Conte, Gian-Marco, Dako, Farouk, Eddy, James, Ezhov, Ivan, Familiar, Ariana, Farahani, Keyvan, Haldar, Shuvanjan, Iglesias, Juan Eugenio, Janas, Anastasia, Johansen, Elaine, Jones, Blaise V, Kofler, Florian, LaBella, Dominic, Lai, Hollie Anne, Van Leemput, Koen, Li, Hongwei Bran, Maleki, Nazanin, McAllister, Aaron S, Meier, Zeke, Menze, Bjoern, Moawad, Ahmed W, Nandolia, Khanak K, Pavaine, Julija, Piraud, Marie, Poussaint, Tina, Prabhu, Sanjay P, Reitman, Zachary, Rodriguez, Andres, Rudie, Jeffrey D, Shaikh, Ibraheem Salman, Shah, Lubdha M., Sheth, Nakul, Shinohara, Russel Taki, Tu, Wenxin, Viswanathan, Karthik, Wang, Chunhao, Ware, Jeffrey B, Wiestler, Benedikt, Wiggins, Walter, Anna Zapaishchykova, Aboian, Mariam, Bornhorst, Miriam, de Blank, Peter, Deutsch, Michelle, Fouladi, Maryam, Hoffman, Lindsey, Kann, Benjamin, Lazow, Margot, Mikael, Leonie, Nabavizadeh, Ali, Packer, Roger, Resnick, Adam, Rood, Brian, Vossough, Arastoo, Bakas, Spyridon, Linguraru, Marius George
Publicado 2023

Meta-Analysis of the Alzheimer’s Disease Human Brain Transcriptome and Functional Dissection in Mouse Models

por Wan, Ying-Wooi, Al-Ouran, Rami, Mangleburg, Carl G., Perumal, Thanneer M., Lee, Tom V., Allison, Katherine, Swarup, Vivek, Funk, Cory C., Gaiteri, Chris, Allen, Mariet, Wang, Minghui, Neuner, Sarah M., Kaczorowski, Catherine C., Philip, Vivek M., Howell, Gareth R., Martini-Stoica, Heidi, Zheng, Hui, Mei, Hongkang, Zhong, Xiaoyan, Kim, Jungwoo Wren, Dawson, Valina L., Dawson, Ted M., Pao, Ping-Chieh, Tsai, Li-Huei, Haure-Mirande, Jean-Vianney, Ehrlich, Michelle E., Chakrabarty, Paramita, Levites, Yona, Wang, Xue, Dammer, Eric B., Srivastava, Gyan, Mukherjee, Sumit, Sieberts, Solveig K., Omberg, Larsson, Dang, Kristen D., Eddy, James A., Snyder, Phil, Chae, Yooree, Amberkar, Sandeep, Wei, Wenbin, Hide, Winston, Preuss, Christoph, Ergun, Ayla, Ebert, Phillip J., Airey, David C., Mostafavi, Sara, Yu, Lei, Klein, Hans-Ulrich, Carter, Gregory W., Collier, David A., Golde, Todd E., Levey, Allan I., Bennett, David A., Estrada, Karol, Townsend, T. Matthew, Zhang, Bin, Schadt, Eric, De Jager, Philip L., Price, Nathan D., Ertekin-Taner, Nilüfer, Liu, Zhandong, Shulman, Joshua M., Mangravite, Lara M., Logsdon, Benjamin A.
Publicado 2020