Detecting Cancer Gene Networks Characterized by Recurrent Genomic Alterations in a Population

por Efroni, Sol, Ben-Hamo, Rotem, Edmonson, Michael, Greenblum, Sharon, Schaefer, Carl F., Buetow, Kenneth H.
Publicado 2011

Discovery Analysis of TCGA Data Reveals Association between Germline Genotype and Survival in Ovarian Cancer Patients

por Braun, Rosemary, Finney, Richard, Yan, Chunhua, Chen, Qing-Rong, Hu, Ying, Edmonson, Michael, Meerzaman, Daoud, Buetow, Kenneth
Publicado 2013

Inhibition of SF3B1 by molecules targeting the spliceosome results in massive aberrant exon skipping

por Wu, Gang, Fan, Liying, Edmonson, Michael N., Shaw, Timothy, Boggs, Kristy, Easton, John, Rusch, Michael C., Webb, Thomas R., Zhang, Jinghui, Potter, Philip M.
Publicado 2018

The landscape of coding RNA editing events in pediatric cancer

por Wen, Ji, Rusch, Michael, Brady, Samuel W., Shao, Ying, Edmonson, Michael N., Shaw, Timothy I., Powers, Brent B., Tian, Liqing, Easton, John, Mullighan, Charles G., Gruber, Tanja, Ellison, David, Zhang, Jinghui
Publicado 2021

The neoepitope landscape in pediatric cancers

por Chang, Ti-Cheng, Carter, Robert A., Li, Yongjin, Li, Yuxin, Wang, Hong, Edmonson, Michael N., Chen, Xiang, Arnold, Paula, Geiger, Terrence L., Wu, Gang, Peng, Junmin, Dyer, Michael, Downing, James R., Green, Douglas R., Thomas, Paul G., Zhang, Jinghui
Publicado 2017

Analysis of error profiles in deep next-generation sequencing data

por Ma, Xiaotu, Shao, Ying, Tian, Liqing, Flasch, Diane A., Mulder, Heather L., Edmonson, Michael N., Liu, Yu, Chen, Xiang, Newman, Scott, Nakitandwe, Joy, Li, Yongjin, Li, Benshang, Shen, Shuhong, Wang, Zhaoming, Shurtleff, Sheila, Robison, Leslie L., Levy, Shawn, Easton, John, Zhang, Jinghui
Publicado 2019

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data

por Tian, Liqing, Li, Yongjin, Edmonson, Michael N., Zhou, Xin, Newman, Scott, McLeod, Clay, Thrasher, Andrew, Liu, Yu, Tang, Bo, Rusch, Michael C., Easton, John, Ma, Jing, Davis, Eric, Trull, Austyn, Michael, J. Robert, Szlachta, Karol, Mullighan, Charles, Baker, Suzanne J., Downing, James R., Ellison, David W., Zhang, Jinghui
Publicado 2020

Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X

por Liu, Yu, Li, Chunliang, Shen, Shuhong, Chen, Xiaolong, Szlachta, Karol, Edmonson, Michael N., Shao, Ying, Ma, Xiaotu, Hyle, Judith, Wright, Shaela, Ju, Bensheng, Rusch, Michael C., Liu, Yanling, Li, Benshang, Macias, Michael, Tian, Liqing, Easton, John, Qian, Maoxiang, Yang, Jun J., Hu, Shaoyan, Look, A. Thomas, Zhang, Jinghui
Publicado 2020

Pediatric Cancer Variant Pathogenicity Information Exchange (PeCanPIE): a cloud-based platform for curating and classifying germline variants

por Edmonson, Michael N., Patel, Aman N., Hedges, Dale J., Wang, Zhaoming, Rampersaud, Evadnie, Kesserwan, Chimene A., Zhou, Xin, Liu, Yanling, Newman, Scott, Rusch, Michael C., McLeod, Clay L., Wilkinson, Mark R., Rice, Stephen V., Soussi, Thierry, Taylor, J. Paul, Benatar, Michael, Becksfort, Jared B., Nichols, Kim E., Robison, Leslie L., Downing, James R., Zhang, Jinghui
Publicado 2019

Mammalian adaptation of influenza A(H7N9) virus is limited by a narrow genetic bottleneck

por Zaraket, Hassan, Baranovich, Tatiana, Kaplan, Bryan S., Carter, Robert, Song, Min-Suk, Paulson, James C., Rehg, Jerold E., Bahl, Justin, Crumpton, Jeri C., Seiler, Jon, Edmonson, Michael, Wu, Gang, Karlsson, Erik, Fabrizio, Thomas, Zhu, Huachen, Guan, Yi, Husain, Matloob, Schultz-Cherry, Stacey, Krauss, Scott, McBride, Ryan, Webster, Robert G., Govorkova, Elena A., Zhang, Jinghui, Russell, Charles J., Webby, Richard J.
Publicado 2015

Defining the condensate landscape of fusion oncoproteins

por Tripathi, Swarnendu, Shirnekhi, Hazheen K., Gorman, Scott D., Chandra, Bappaditya, Baggett, David W., Park, Cheon-Gil, Somjee, Ramiz, Lang, Benjamin, Hosseini, Seyed Mohammad Hadi, Pioso, Brittany J., Li, Yongsheng, Iacobucci, Ilaria, Gao, Qingsong, Edmonson, Michael N., Rice, Stephen V., Zhou, Xin, Bollinger, John, Mitrea, Diana M., White, Michael R., McGrail, Daniel J., Jarosz, Daniel F., Yi, S. Stephen, Babu, M. Madan, Mullighan, Charles G., Zhang, Jinghui, Sahni, Nidhi, Kriwacki, Richard W.
Publicado 2023

The Genomic Landscape of Childhood and Adolescent Melanoma

por Lu, Charles, Zhang, Jinghui, Nagahawatte, Panduka, Easton, John, Lee, Seungjae, Liu, Zhifa, Ding, Li, Wyczalkowski, Matthew A, Valentine, Marcus, Navid, Fariba, Mulder, Heather, Tatevossian, Ruth G, Dalton, James, Davenport, James, Yin, Zhirong, Edmonson, Michael, Rusch, Michael, Wu, Gang, Li, Yongjin, Parker, Matthew, Hedlund, Erin, Shurtleff, Sheila, Raimondi, Susana, Bhavin, Vadodaria, Donald, Yergeau, Mardis, Elaine R, Wilson, Richard K, Evans, William E, Ellison, David W, Pounds, Stanley, Dyer, Michael, Downing, James R, Pappo, Alberto, Bahrami, Armita
Publicado 2015

Germline ETV6 Mutations Confer Susceptibility to Acute Lymphoblastic Leukemia and Thrombocytopenia

por Topka, Sabine, Vijai, Joseph, Walsh, Michael F., Jacobs, Lauren, Maria, Ann, Villano, Danylo, Gaddam, Pragna, Wu, Gang, McGee, Rose B., Quinn, Emily, Inaba, Hiroto, Hartford, Christine, Pui, Ching-hon, Pappo, Alberto, Edmonson, Michael, Zhang, Michael Y., Stepensky, Polina, Steinherz, Peter, Schrader, Kasmintan, Lincoln, Anne, Bussel, James, Lipkin, Steve M., Goldgur, Yehuda, Harit, Mira, Stadler, Zsofia K., Mullighan, Charles, Weintraub, Michael, Shimamura, Akiko, Zhang, Jinghui, Downing, James R., Nichols, Kim E., Offit, Kenneth
Publicado 2015

Germline Genetic Variation in ETV6 and Risk of Childhood Acute Lymphoblastic Leukemia: a Systematic Genetic Study

por Moriyama, Takaya, Metzger, Monika L., Wu, Gang, Nishii, Rina, Qian, Maoxiang, Devidas, Meenakshi, Yang, Wenjian, Cheng, Cheng, Cao, Emily, Quinn, Raimondi, Susana, Gastier-Foster, Julie M., Raetz, Elizabeth, Larsen, Eric, Martin, Paul L., Bowman, W. Paul, Winick, Naomi, Komada, Yoshihiro, Wang, Shuoguo, Edmonson, Michael, Xu, Heng, Mardis, Elaine, Fulton, Robert, Pui, Mullighan, Charles, Evans, William E., Zhang, Jinghui, Hunger, Stephen P., Relling, Mary V., Nichols, Kim E., Loh, Mignon L., Yang, Jun J.
Publicado 2015

Enrichment of heterozygous germline RECQL4 loss-of-function variants in pediatric osteosarcoma

por Maciaszek, Jamie L., Oak, Ninad, Chen, Wenan, Hamilton, Kayla V., McGee, Rose B., Nuccio, Regina, Mostafavi, Roya, Hines-Dowell, Stacy, Harrison, Lynn, Taylor, Leslie, Gerhardt, Elsie L., Ouma, Annastasia, Edmonson, Michael N., Patel, Aman, Nakitandwe, Joy, Pappo, Alberto S., Azzato, Elizabeth M., Shurtleff, Sheila A., Ellison, David W., Downing, James R., Hudson, Melissa M., Robison, Leslie L., Santana, Victor, Newman, Scott, Zhang, Jinghui, Wang, Zhaoming, Wu, Gang, Nichols, Kim E., Kesserwan, Chimene A.
Publicado 2019

Rise and fall of subclones from diagnosis to relapse in pediatric B-acute lymphoblastic leukaemia

por Ma, Xiaotu, Edmonson, Michael, Yergeau, Donald, Muzny, Donna M., Hampton, Oliver A., Rusch, Michael, Song, Guangchun, Easton, John, Harvey, Richard C., Wheeler, David A., Ma, Jing, Doddapaneni, HarshaVardhan, Vadodaria, Bhavin, Wu, Gang, Nagahawatte, Panduka, Carroll, William L., Chen, I-Ming, Gastier-Foster, Julie M., Relling, Mary V., Smith, Malcolm A., Devidas, Meenakshi, Auvil, Jaime M. Guidry, Downing, James R., Loh, Mignon L., Willman, Cheryl L., Gerhard, Daniela S., Mullighan, Charles G., Hunger, Stephen P., Zhang, Jinghui
Publicado 2015

Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome

por Rusch, Michael, Nakitandwe, Joy, Shurtleff, Sheila, Newman, Scott, Zhang, Zhaojie, Edmonson, Michael N., Parker, Matthew, Jiao, Yuannian, Ma, Xiaotu, Liu, Yanling, Gu, Jiali, Walsh, Michael F., Becksfort, Jared, Thrasher, Andrew, Li, Yongjin, McMurry, James, Hedlund, Erin, Patel, Aman, Easton, John, Yergeau, Donald, Vadodaria, Bhavin, Tatevossian, Ruth G., Raimondi, Susana, Hedges, Dale, Chen, Xiang, Hagiwara, Kohei, McGee, Rose, Robinson, Giles W., Klco, Jeffery M., Gruber, Tanja A., Ellison, David W., Downing, James R, Zhang, Jinghui
Publicado 2018

Pan-cancer genome and transcriptome analyses of 1,699 pediatric leukemias and solid tumors

por Ma, Xiaotu, Liu, Yu, Liu, Yanling, Alexandrov, Ludmil B, Edmonson, Michael N., Gawad, Charles, Zhou, Xin, Li, Yongjin, Rusch, Michael C., Easton, John, Huether, Robert, Gonzalez-Pena, Veronica, Wilkinson, Mark R., Hermida, Leandro C., Davis, Sean, Sioson, Edgar, Pounds, Stanley, Cao, Xueyuan, Ries, Rhonda E., Wang, Zhaoming, Chen, Xiang, Dong, Li, Diskin, Sharon J., Smith, Malcolm A., Guidry Auvil, Jaime M., Meltzer, Paul S., Lau, Ching C., Perlman, Elizabeth J., Maris, John M., Meshinchi, Soheil, Hunger, Stephen P., Gerhard, Daniela S., Zhang, Jinghui
Publicado 2018

THE GENOMIC LANDSCAPE OF PEDIATRIC AND YOUNG ADULT T-LINEAGE ACUTE LYMPHOBLASTIC LEUKEMIA

por Liu, Yu, Easton, John, Shao, Ying, Maciaszek, Jamie, Wang, Zhaoming, Wilkinson, Mark R., McCastlain, Kelly, Edmonson, Michael, Pounds, Stanley B., Shi, Lei, Zhou, Xin, Ma, Xiaotu, Sioson, Edgar, Li, Yongjin, Rusch, Michael, Gupta, Pankaj, Pei, Deqing, Cheng, Cheng, Smith, Malcolm A., Auvil, Jaime Guidry, Gerhard, Daniela S., Relling, Mary V., Winick, Naomi J., Carroll, Andrew J., Heerema, Nyla A., Raetz, Elizabeth, Devidas, Meenakshi, Willman, Cheryl L., Harvey, Richard C., Carroll, William L., Dunsmore, Kimberly P., Winter, Stuart S., Wood, Brent L, Sorrentino, Brian P., Downing, James R., Loh, Mignon L., Hunger, Stephen P, Zhang, Jinghui, Mullighan, Charles G.
Publicado 2017

The genomic landscape of diffuse intrinsic pontine glioma and pediatric non-brainstem high-grade glioma

por Wu, Gang, Diaz, Alexander K, Paugh, Barbara S, Rankin, Sherri L, Ju, Bensheng, Li, Yongjin, Zhu, Xiaoyan, Qu, Chunxu, Chen, Xiang, Zhang, Junyuan, Easton, John, Edmonson, Michael, Ma, Xiaotu, Lu, Charles, Nagahawatte, Panduka, Hedlund, Erin, Rusch, Michael, Pounds, Stanley, Lin, Tong, Onar-Thomas, Arzu, Huether, Robert, Kriwacki, Richard, Parker, Matthew, Gupta, Pankaj, Becksfort, Jared, Wei, Lei, Mulder, Heather L, Boggs, Kristy, Vadodaria, Bhavin, Yergeau, Donald, Russell, Jake C, Ochoa, Kerri, Fulton, Robert S, Fulton, Lucinda L, Jones, Chris, Boop, Frederick A, Broniscer, Alberto, Wetmore, Cynthia, Gajjar, Amar, Ding, Li, Mardis, Elaine R, Wilson, Richard K, Taylor, Michael R, Downing, James R, Ellison, David W, Zhang, Jinghui, Baker, Suzanne J
Publicado 2014