Exploring functionally related enzymes using radially distributed properties of active sites around the reacting points of bound ligands

por Ueno, Keisuke, Mineta, Katsuhiko, Ito, Kimihito, Endo, Toshinori
Publicado 2012

A Generalized Linear Model for Decomposing Cis-regulatory, Parent-of-Origin, and Maternal Effects on Allele-Specific Gene Expression

por Takada, Yasuaki, Miyagi, Ryutaro, Takahashi, Aya, Endo, Toshinori, Osada, Naoki
Publicado 2017

A New Approach to Drug Repurposing with Two-Stage Prediction, Machine Learning, and Unsupervised Clustering of Gene Expression

por Cong, Yi, Shintani, Misaki, Imanari, Fuga, Osada, Naoki, Endo, Toshinori
Publicado 2022

Current trends in RNA virus detection through metatranscriptome sequencing data

por Nakagawa, So, Sakaguchi, Shoichi, Ogura, Atsushi, Mineta, Katsuhiko, Endo, Toshinori, Suzuki, Yoshiyuki, Gojobori, Takashi
Publicado 2023

Whole-Genome Sequencing of Vero E6 (VERO C1008) and Comparative Analysis of Four Vero Cell Sublines

por Konishi, Kazuhiro, Yamaji, Toshiyuki, Sakuma, Chisato, Kasai, Fumio, Endo, Toshinori, Kohara, Arihiro, Hanada, Kentaro, Osada, Naoki
Publicado 2022

Identification of Characteristic Genomic Markers in Human Hepatoma HuH-7 and Huh7.5.1-8 Cell Lines

por Kawamoto, Masaki, Yamaji, Toshiyuki, Saito, Kyoko, Shirasago, Yoshitaka, Satomura, Kazuhiro, Endo, Toshinori, Fukasawa, Masayoshi, Hanada, Kentaro, Osada, Naoki
Publicado 2020

Exhaustive identification of conserved upstream open reading frames with potential translational regulatory functions from animal genomes

por Takahashi, Hiro, Miyaki, Shido, Onouchi, Hitoshi, Motomura, Taichiro, Idesako, Nobuo, Takahashi, Anna, Murase, Masataka, Fukuyoshi, Shuichi, Endo, Toshinori, Satou, Kenji, Naito, Satoshi, Itoh, Motoyuki
Publicado 2020

Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA

por Takahashi, Hiro, Hayashi, Noriya, Hiragori, Yuta, Sasaki, Shun, Motomura, Taichiro, Yamashita, Yui, Naito, Satoshi, Takahashi, Anna, Fuse, Kazuyuki, Satou, Kenji, Endo, Toshinori, Kojima, Shoko, Onouchi, Hitoshi
Publicado 2020

CIPRO 2.5: Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and review...

por Endo, Toshinori, Ueno, Keisuke, Yonezawa, Kouki, Mineta, Katsuhiko, Hotta, Kohji, Satou, Yutaka, Yamada, Lixy, Ogasawara, Michio, Takahashi, Hiroki, Nakajima, Ayako, Nakachi, Mia, Nomura, Mamoru, Yaguchi, Junko, Sasakura, Yasunori, Yamasaki, Chisato, Sera, Miho, Yoshizawa, Akiyasu C., Imanishi, Tadashi, Taniguchi, Hisaaki, Inaba, Kazuo
Publicado 2011

CIPRO 2.5: Ciona intestinalis Protein Database - a unique integrated repository of large-scale omics data, bioinformatic analyses, and curated annotation, with ability for user rat...

por Endo, Toshinori, Ueno, Keisuke, Yonezawa, Kouki, Mineta, Katsuhiko, Hotta, Kohji, Satou, Yutaka, Yamada, Lixy, Ogasawara, Michio, Takahashi, Hiroki, Nakajima, Ayako, Nakachi, Mia, Nomura, Mamoru, Yaguchi, Junko, Konno, Alu, Sasakura, Yasunori, Yoshizawa, Akiyasu C, Taniguchi, Hisaaki, Yamasaki, Chisato, Sera, Miho, Imanishi, Tadashi, Inaba, Kazuo
Publicado 2010

Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations

por Satou, Yutaka, Mineta, Katsuhiko, Ogasawara, Michio, Sasakura, Yasunori, Shoguchi, Eiichi, Ueno, Keisuke, Yamada, Lixy, Matsumoto, Jun, Wasserscheid, Jessica, Dewar, Ken, Wiley, Graham B, Macmil, Simone L, Roe, Bruce A, Zeller, Robert W, Hastings, Kenneth EM, Lemaire, Patrick, Lindquist, Erika, Endo, Toshinori, Hotta, Kohji, Inaba, Kazuo
Publicado 2008

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees

por Matsuya, Akihiro, Sakate, Ryuichi, Kawahara, Yoshihiro, Koyanagi, Kanako O., Sato, Yoshiharu, Fujii, Yasuyuki, Yamasaki, Chisato, Habara, Takuya, Nakaoka, Hajime, Todokoro, Fusano, Yamaguchi, Kaori, Endo, Toshinori, OOta, Satoshi, Makalowski, Wojciech, Ikeo, Kazuho, Suzuki, Yoshiyuki, Hanada, Kousuke, Hashimoto, Katsuyuki, Hirai, Momoki, Iwama, Hisakazu, Saitou, Naruya, Hiraki, Aiko T., Jin, Lihua, Kaneko, Yayoi, Kanno, Masako, Murakami, Katsuhiko, Noda, Akiko Ogura, Saichi, Naomi, Sanbonmatsu, Ryoko, Suzuki, Mami, Takeda, Jun-ichi, Tanaka, Masayuki, Gojobori, Takashi, Imanishi, Tadashi, Itoh, Takeshi
Publicado 2008

Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones

por Imanishi, Tadashi, Itoh, Takeshi, Suzuki, Yutaka, O'Donovan, Claire, Fukuchi, Satoshi, Koyanagi, Kanako O, Barrero, Roberto A, Tamura, Takuro, Yamaguchi-Kabata, Yumi, Tanino, Motohiko, Yura, Kei, Miyazaki, Satoru, Ikeo, Kazuho, Homma, Keiichi, Kasprzyk, Arek, Nishikawa, Tetsuo, Hirakawa, Mika, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Ashurst, Jennifer, Jia, Libin, Nakao, Mitsuteru, Thomas, Michael A, Mulder, Nicola, Karavidopoulou, Youla, Jin, Lihua, Kim, Sangsoo, Yasuda, Tomohiro, Lenhard, Boris, Eveno, Eric, Suzuki, Yoshiyuki, Yamasaki, Chisato, Takeda, Jun-ichi, Gough, Craig, Hilton, Phillip, Fujii, Yasuyuki, Sakai, Hiroaki, Tanaka, Susumu, Amid, Clara, Bellgard, Matthew, Bonaldo, Maria de Fatima, Bono, Hidemasa, Bromberg, Susan K, Brookes, Anthony J, Bruford, Elspeth, Carninci, Piero, Chelala, Claude, Couillault, Christine, de Souza, Sandro J., Debily, Marie-Anne, Devignes, Marie-Dominique, Dubchak, Inna, Endo, Toshinori, Estreicher, Anne, Eyras, Eduardo, Fukami-Kobayashi, Kaoru, R. Gopinath, Gopal, Graudens, Esther, Hahn, Yoonsoo, Han, Michael, Han, Ze-Guang, Hanada, Kousuke, Hanaoka, Hideki, Harada, Erimi, Hashimoto, Katsuyuki, Hinz, Ursula, Hirai, Momoki, Hishiki, Teruyoshi, Hopkinson, Ian, Imbeaud, Sandrine, Inoko, Hidetoshi, Kanapin, Alexander, Kaneko, Yayoi, Kasukawa, Takeya, Kelso, Janet, Kersey, Paul, Kikuno, Reiko, Kimura, Kouichi, Korn, Bernhard, Kuryshev, Vladimir, Makalowska, Izabela, Makino, Takashi, Mano, Shuhei, Mariage-Samson, Regine, Mashima, Jun, Matsuda, Hideo, Mewes, Hans-Werner, Minoshima, Shinsei, Nagai, Keiichi, Nagasaki, Hideki, Nagata, Naoki, Nigam, Rajni, Ogasawara, Osamu, Ohara, Osamu, Ohtsubo, Masafumi, Okada, Norihiro, Okido, Toshihisa, Oota, Satoshi, Ota, Motonori, Ota, Toshio, Otsuki, Tetsuji, Piatier-Tonneau, Dominique, Poustka, Annemarie, Ren, Shuang-Xi, Saitou, Naruya, Sakai, Katsunaga, Sakamoto, Shigetaka, Sakate, Ryuichi, Schupp, Ingo, Servant, Florence, Sherry, Stephen, Shiba, Rie, Shimizu, Nobuyoshi, Shimoyama, Mary, Simpson, Andrew J, Soares, Bento, Steward, Charles, Suwa, Makiko, Suzuki, Mami, Takahashi, Aiko, Tamiya, Gen, Tanaka, Hiroshi, Taylor, Todd, Terwilliger, Joseph D, Unneberg, Per, Veeramachaneni, Vamsi, Watanabe, Shinya, Wilming, Laurens, Yasuda, Norikazu, Yoo, Hyang-Sook, Stodolsky, Marvin, Makalowski, Wojciech, Go, Mitiko, Nakai, Kenta, Takagi, Toshihisa, Kanehisa, Minoru, Sakaki, Yoshiyuki, Quackenbush, John, Okazaki, Yasushi, Hayashizaki, Yoshihide, Hide, Winston, Chakraborty, Ranajit, Nishikawa, Ken, Sugawara, Hideaki, Tateno, Yoshio, Chen, Zhu, Oishi, Michio, Tonellato, Peter, Apweiler, Rolf, Okubo, Kousaku, Wagner, Lukas, Wiemann, Stefan, Strausberg, Robert L, Isogai, Takao, Auffray, Charles, Nomura, Nobuo, Gojobori, Takashi, Sugano, Sumio
Publicado 2004