Prevalence of alternative splicing choices in Arabidopsis thaliana

por English, Adam C, Patel, Ketan S, Loraine, Ann E
Publicado 2010

PBHoney: identifying genomic variants via long-read discordance and interrupted mapping

por English, Adam C, Salerno, William J, Reid, Jeffrey G
Publicado 2014

Truvari: refined structural variant comparison preserves allelic diversity

por English, Adam C., Menon, Vipin K., Gibbs, Richard A., Metcalf, Ginger A., Sedlazeck, Fritz J.
Publicado 2022

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

por English, Adam C., Richards, Stephen, Han, Yi, Wang, Min, Vee, Vanesa, Qu, Jiaxin, Qin, Xiang, Muzny, Donna M., Reid, Jeffrey G., Worley, Kim C., Gibbs, Richard A.
Publicado 2012

PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations

por Wang, Min, Beck, Christine R, English, Adam C, Meng, Qingchang, Buhay, Christian, Han, Yi, Doddapaneni, Harsha V, Yu, Fuli, Boerwinkle, Eric, Lupski, James R, Muzny, Donna M, Gibbs, Richard A
Publicado 2015

SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads

por Hampton, Oliver A., English, Adam C., Wang, Mark, Salerno, William J., Liu, Yue, Muzny, Donna M., Han, Yi, Wheeler, David A., Worley, Kim C., Lupski, James R., Gibbs, Richard A.
Publicado 2017

xAtlas: scalable small variant calling across heterogeneous next-generation sequencing experiments

por Farek, Jesse, Hughes, Daniel, Salerno, William, Zhu, Yiming, Pisupati, Aishwarya, Mansfield, Adam, Krasheninina, Olga, English, Adam C, Metcalf, Ginger, Boerwinkle, Eric, Muzny, Donna M, Gibbs, Richard, Khan, Ziad, Sedlazeck, Fritz J
Publicado 2023

Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

por Regier, Allison A., Farjoun, Yossi, Larson, David E., Krasheninina, Olga, Kang, Hyun Min, Howrigan, Daniel P., Chen, Bo-Juen, Kher, Manisha, Banks, Eric, Ames, Darren C., English, Adam C., Li, Heng, Xing, Jinchuan, Zhang, Yeting, Matise, Tara, Abecasis, Goncalo R., Salerno, Will, Zody, Michael C., Neale, Benjamin M., Hall, Ira M.
Publicado 2018

Assessing structural variation in a personal genome—towards a human reference diploid genome

por English, Adam C, Salerno, William J, Hampton, Oliver A, Gonzaga-Jauregui, Claudia, Ambreth, Shruthi, Ritter, Deborah I, Beck, Christine R, Davis, Caleb F, Dahdouli, Mahmoud, Ma, Singer, Carroll, Andrew, Veeraraghavan, Narayanan, Bruestle, Jeremy, Drees, Becky, Hastie, Alex, Lam, Ernest T, White, Simon, Mishra, Pamela, Wang, Min, Han, Yi, Zhang, Feng, Stankiewicz, Pawel, Wheeler, David A, Reid, Jeffrey G, Muzny, Donna M, Rogers, Jeffrey, Sabo, Aniko, Worley, Kim C, Lupski, James R, Boerwinkle, Eric, Gibbs, Richard A
Publicado 2015

A robust benchmark for detection of germline large deletions and insertions

por Zook, Justin M., Hansen, Nancy F., Olson, Nathan D., Chapman, Lesley M., Mullikin, James C., Xiao, Chunlin, Sherry, Stephen, Koren, Sergey, Phillippy, Adam M., Boutros, Paul C., Sahraeian, Sayed Mohammad E., Huang, Vincent, Rouette, Alexandre, Alexander, Noah, Mason, Christopher E., Hajirasouliha, Iman, Ricketts, Camir, Lee, Joyce, Tearle, Rick, Fiddes, Ian T., Barrio, Alvaro Martinez, Wala, Jeremiah, Carroll, Andrew, Ghaffari, Noushin, Rodriguez, Oscar L., Bashir, Ali, Jackman, Shaun, Farrell, John J, Wenger, Aaron M, Alkan, Can, Soylev, Arda, Schatz, Michael C., Garg, Shilpa, Church, George, Marschall, Tobias, Chen, Ken, Fan, Xian, English, Adam C., Rosenfeld, Jeffrey A., Zhou, Weichen, Mills, Ryan E., Sage, Jay M., Davis, Jennifer R., Kaiser, Michael D., Oliver, John S., Catalano, Anthony P., Chaisson, Mark JP, Spies, Noah, Sedlazeck, Fritz J., Salit, Marc
Publicado 2020

Structural variation across 138,134 samples in the TOPMed consortium

por Jun, Goo, English, Adam C, Metcalf, Ginger A, Yang, Jianzhi, Chaisson, Mark JP, Pankratz, Nathan, Menon, Vipin K, Salerno, William J, Krasheninina, Olga, Smith, Albert V, Lane, John A, Blackwell, Tom, Kang, Hyun Min, Salvi, Sejal, Meng, Qingchang, Shen, Hua, Pasham, Divya, Bhamidipati, Sravya, Kottapalli, Kavya, Arnett, Donna K., Ashley-Koch, Allison, Auer, Paul L., Beutel, Kathleen M, Bis, Joshua C., Blangero, John, Bowden, Donald W., Brody, Jennifer A., Cade, Brian E., Chen, Yii-Der Ida, Cho, Michael H., Curran, Joanne E., Fornage, Myriam, Freedman, Barry I., Fingerlin, Tasha, Gelb, Bruce D., Hou, Lifang, Hung, Yi-Jen, Kane, John P, Kaplan, Robert, Kim, Wonji, Loos, Ruth J.F., Marcus, Gregory M, Mathias, Rasika A., McGarvey, Stephen T., Montgomery, Courtney, Naseri, Take, Nouraie, S. Mehdi, Preuss, Michael H., Palmer, Nicholette D., Peyser, Patricia A., Raffield, Laura M., Ratan, Aakrosh, Redline, Susan, Reupena, Sefuiva, Rotter, Jerome I., Rich, Stephen S., Rienstra, Michiel, Ruczinski, Ingo, Sankaran, Vijay G., Schwartz, David A., Seidman, Christine E., Seidman, Jonathan G., Silverman, Edwin K., Smith, Jennifer A., Stilp, Adrienne, Taylor, Kent D., Telen, Marilyn J., Weiss, Scott T., Williams, L. Keoki, Wu, Baojun, Yanek, Lisa R., Zhang, Yingze, Lasky-Su, Jessica, Gingras, Marie Claude, Dutcher, Susan K., Eichler, Evan E., Gabriel, Stacey, Germer, Soren, Kim, Ryan, Viaud-Martinez, Karine A., Nickerson, Deborah A., Luo, James, Reiner, Alex, Gibbs, Richard A, Boerwinkle, Eric, Abecasis, Goncalo, Sedlazeck, Fritz J
Publicado 2023

Structural variation across 138,134 samples in the TOPMed consortium

por Jun, Goo, English, Adam C, Metcalf, Ginger A, Yang, Jianzhi, Chaisson, Mark JP, Pankratz, Nathan, Menon, Vipin K, Salerno, William J, Krasheninina, Olga, Smith, Albert V, Lane, John A, Blackwell, Tom, Kang, Hyun Min, Salvi, Sejal, Meng, Qingchang, Shen, Hua, Pasham, Divya, Bhamidipati, Sravya, Kottapalli, Kavya, Arnett, Donna K., Ashley-Koch, Allison, Auer, Paul L., Beutel, Kathleen M, Bis, Joshua C., Blangero, John, Bowden, Donald W., Brody, Jennifer A., Cade, Brian E., Chen, Yii-Der Ida, Cho, Michael H., Curran, Joanne E., Fornage, Myriam, Freedman, Barry I., Fingerlin, Tasha, Gelb, Bruce D., Hou, Lifang, Hung, Yi-Jen, Kane, John P, Kaplan, Robert, Kim, Wonji, Loos, Ruth J.F., Marcus, Gregory M, Mathias, Rasika A., McGarvey, Stephen T., Montgomery, Courtney, Naseri, Take, Nouraie, S. Mehdi, Preuss, Michael H., Palmer, Nicholette D., Peyser, Patricia A., Raffield, Laura M., Ratan, Aakrosh, Redline, Susan, Reupena, Sefuiva, Rotter, Jerome I., Rich, Stephen S., Rienstra, Michiel, Ruczinski, Ingo, Sankaran, Vijay G., Schwartz, David A., Seidman, Christine E., Seidman, Jonathan G., Silverman, Edwin K., Smith, Jennifer A., Stilp, Adrienne, Taylor, Kent D., Telen, Marilyn J., Weiss, Scott T., Williams, L. Keoki, Wu, Baojun, Yanek, Lisa R., Zhang, Yingze, Lasky-Su, Jessica, Gingras, Marie Claude, Dutcher, Susan K., Eichler, Evan E., Gabriel, Stacey, Germer, Soren, Kim, Ryan, Viaud-Martinez, Karine A., Nickerson, Deborah A., Luo, James, Reiner, Alex, Gibbs, Richard A, Boerwinkle, Eric, Abecasis, Goncalo, Sedlazeck, Fritz J
Publicado 2023