Strainer: software for analysis of population variation in community genomic datasets

por Eppley, John M, Tyson, Gene W, Getz, Wayne M, Banfield, Jillian F
Publicado 2007

Diverse Genomic Traits Differentiate Sinking-Particle-Associated versus Free-Living Microbes throughout the Oligotrophic Open Ocean Water Column

por Leu, Andy O., Eppley, John M., Burger, Andrew, DeLong, Edward F.
Publicado 2022

Marine viral particles reveal an expansive repertoire of phage-parasitizing mobile elements

por Eppley, John M., Biller, Steven J., Luo, Elaine, Burger, Andrew, DeLong, Edward F.
Publicado 2022

Diel Oscillation of Microbial Gene Transcripts Declines With Depth in Oligotrophic Ocean Waters

por Vislova, Alice, Sosa, Oscar A., Eppley, John M., Romano, Anna E., DeLong, Edward F.
Publicado 2019

Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column

por Luo, Elaine, Eppley, John M., Romano, Anna E., Mende, Daniel R., DeLong, Edward F.
Publicado 2020

Diversity and origins of bacterial and archaeal viruses on sinking particles reaching the abyssal ocean

por Luo, Elaine, Leu, Andy O., Eppley, John M., Karl, David M., DeLong, Edward F.
Publicado 2022

Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities

por Stewart, Frank J, Sharma, Adrian K, Bryant, Jessica A, Eppley, John M, DeLong, Edward F
Publicado 2011

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre

por Fontanez, Kristina M., Eppley, John M., Samo, Ty J., Karl, David M., DeLong, Edward F.
Publicado 2015

Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies

por Mende, Daniel R., Aylward, Frank O., Eppley, John M., Nielsen, Torben N., DeLong, Edward F.
Publicado 2016

Microbial dynamics of elevated carbon flux in the open ocean’s abyss

por Poff, Kirsten E., Leu, Andy O., Eppley, John M., Karl, David M., DeLong, Edward F.
Publicado 2021

Planktonic microbial signatures of sinking particle export in the open ocean’s interior

por Li, Fuyan, Burger, Andrew, Eppley, John M., Poff, Kirsten E., Karl, David M., DeLong, Edward F.
Publicado 2023

Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage

por Boeuf, Dominique, Eppley, John M., Mende, Daniel R., Malmstrom, Rex R., Woyke, Tanja, DeLong, Edward F.
Publicado 2021

Microbial Sources of Exocellular DNA in the Ocean

por Linney, Morgan D., Eppley, John M., Romano, Anna E., Luo, Elaine, DeLong, Edward F., Karl, David M.
Publicado 2022

Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre

por Bryant, Jessica A, Aylward, Frank O, Eppley, John M, Karl, David M, Church, Matthew J, DeLong, Edward F
Publicado 2016

Diel cycling and long-term persistence of viruses in the ocean’s euphotic zone

por Aylward, Frank O., Boeuf, Dominique, Mende, Daniel R., Wood-Charlson, Elisha M., Vislova, Alice, Eppley, John M., Romano, Anna E., DeLong, Edward F.
Publicado 2017

Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean

por Boeuf, Dominique, Edwards, Bethanie R., Eppley, John M., Hu, Sarah K., Poff, Kirsten E., Romano, Anna E., Caron, David A., Karl, David M., DeLong, Edward F.
Publicado 2019

Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities

por Beaulaurier, John, Luo, Elaine, Eppley, John M., Uyl, Paul Den, Dai, Xiaoguang, Burger, Andrew, Turner, Daniel J., Pendelton, Matthew, Juul, Sissel, Harrington, Eoghan, DeLong, Edward F.
Publicado 2020

Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

por Grote, Jana, Bayindirli, Cansu, Bergauer, Kristin, Carpintero de Moraes, Paula, Chen, Huan, D’Ambrosio, Lindsay, Edwards, Bethanie, Fernández-Gómez, Beatriz, Hamisi, Mariam, Logares, Ramiro, Nguyen, Dan, Rii, Yoshimi M., Saeck, Emily, Schutte, Charles, Widner, Brittany, Church, Matthew J., Steward, Grieg F., Karl, David M., DeLong, Edward F., Eppley, John M., Schuster, Stephan C., Kyrpides, Nikos C., Rappé, Michael S.
Publicado 2011

Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually sma...

por Durham, Bryndan P., Grote, Jana, Whittaker, Kerry A., Bender, Sara J., Luo, Haiwei, Grim, Sharon L., Brown, Julia M., Casey, John R., Dron, Antony, Florez-Leiva, Lennin, Krupke, Andreas, Luria, Catherine M., Mine, Aric H., Nigro, Olivia D., Pather, Santhiska, Talarmin, Agathe, Wear, Emma K., Weber, Thomas S., Wilson, Jesse M., Church, Matthew J., DeLong, Edward F., Karl, David M., Steward, Grieg F., Eppley, John M., Kyrpides, Nikos C., Schuster, Stephan, Rappé, Michael S.
Publicado 2014