SWI/SNF Chromatin-remodeling Factors: Multiscale Analyses and Diverse Functions

por Euskirchen, Ghia, Auerbach, Raymond K., Snyder, Michael
Publicado 2012

Molecular Mechanisms of Ethanol-Induced Pathogenesis Revealed by RNA-Sequencing

por Camarena, Laura, Bruno, Vincent, Euskirchen, Ghia, Poggio, Sebastian, Snyder, Michael
Publicado 2010

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

por Zhang, Yong, Moqtaderi, Zarmik, Rattner, Barbara P., Euskirchen, Ghia, Snyder, Michael, Kadonaga, James T., Liu, X. Shirley, Struhl, Kevin
Publicado 2009

Integrated systems analysis reveals a molecular network underlying autism spectrum disorders

por Li, Jingjing, Shi, Minyi, Ma, Zhihai, Zhao, Shuchun, Euskirchen, Ghia, Ziskin, Jennifer, Urban, Alexander, Hallmayer, Joachim, Snyder, Michael
Publicado 2014

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing

por Lefrançois, Philippe, Euskirchen, Ghia M, Auerbach, Raymond K, Rozowsky, Joel, Gibson, Theodore, Yellman, Christopher M, Gerstein, Mark, Snyder, Michael
Publicado 2009

Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome

por Wu, Jia Qian, Du, Jiang, Rozowsky, Joel, Zhang, Zhengdong, Urban, Alexander E, Euskirchen, Ghia, Weissman, Sherman, Gerstein, Mark, Snyder, Michael
Publicado 2008

Diverse Roles and Interactions of the SWI/SNF Chromatin Remodeling Complex Revealed Using Global Approaches

por Euskirchen, Ghia M., Auerbach, Raymond K., Davidov, Eugene, Gianoulis, Tara A., Zhong, Guoneng, Rozowsky, Joel, Bhardwaj, Nitin, Gerstein, Mark B., Snyder, Michael
Publicado 2011

Transcriptome Signature and Regulation in Human Somatic Cell Reprogramming

por Tanaka, Yoshiaki, Hysolli, Eriona, Su, Juan, Xiang, Yangfei, Kim, Kun-Yong, Zhong, Mei, Li, Yumei, Heydari, Kartoosh, Euskirchen, Ghia, Snyder, Michael P., Pan, Xinghua, Weissman, Sherman Morton, Park, In-Hyun
Publicado 2015

Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors

por Yang, Jennifer, Tanaka, Yoshiaki, Seay, Montrell, Li, Zhen, Jin, Jiaqi, Garmire, Lana Xia, Zhu, Xun, Taylor, Ashley, Li, Weidong, Euskirchen, Ghia, Halene, Stephanie, Kluger, Yuval, Snyder, Michael P., Park, In-Hyun, Pan, Xinghua, Weissman, Sherman Morton
Publicado 2017

Bisulfite-independent analysis of CpG island methylation enables genome-scale stratification of single cells

por Han, Lin, Wu, Hua-Jun, Zhu, Haiying, Kim, Kun-Yong, Marjani, Sadie L., Riester, Markus, Euskirchen, Ghia, Zi, Xiaoyuan, Yang, Jennifer, Han, Jasper, Snyder, Michael, Park, In-Hyun, Irizarry, Rafael, Weissman, Sherman M., Michor, Franziska, Fan, Rong, Pan, Xinghua
Publicado 2017

Individual heritable differences result in unique cell lymphocyte receptor repertoires of naïve and antigen-experienced cells

por Rubelt, Florian, Bolen, Christopher R., McGuire, Helen M., Heiden, Jason A. Vander, Gadala-Maria, Daniel, Levin, Mikhail, M. Euskirchen, Ghia, Mamedov, Murad R., Swan, Gary E., Dekker, Cornelia L., Cowell, Lindsay G., Kleinstein, Steven H., Davis, Mark M.
Publicado 2016

Principles of regulatory information conservation between mouse and human

por Cheng, Yong, Ma, Zhihai, Kim, Bong-Hyun, Wu, Weisheng, Cayting, Philip, Boyle, Alan P., Sundaram, Vasavi, Xing, Xiaoyun, Dogan, Nergiz, Li, Jingjing, Euskirchen, Ghia, Lin, Shin, Lin, Yiing, Visel, Axel, Kawli, Trupti, Yang, Xinqiong, Patacsil, Dorrelyn, Keller, Cheryl A., Giardine, Belinda, The Mouse ENCODE Consortium, Kundaje, Anshul, Wang, Ting, Pennacchio, Len A., Weng, Zhiping, Hardison, Ross C., Snyder, Michael P.
Publicado 2014

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

por Landt, Stephen G., Marinov, Georgi K., Kundaje, Anshul, Kheradpour, Pouya, Pauli, Florencia, Batzoglou, Serafim, Bernstein, Bradley E., Bickel, Peter, Brown, James B., Cayting, Philip, Chen, Yiwen, DeSalvo, Gilberto, Epstein, Charles, Fisher-Aylor, Katherine I., Euskirchen, Ghia, Gerstein, Mark, Gertz, Jason, Hartemink, Alexander J., Hoffman, Michael M., Iyer, Vishwanath R., Jung, Youngsook L., Karmakar, Subhradip, Kellis, Manolis, Kharchenko, Peter V., Li, Qunhua, Liu, Tao, Liu, X. Shirley, Ma, Lijia, Milosavljevic, Aleksandar, Myers, Richard M., Park, Peter J., Pazin, Michael J., Perry, Marc D., Raha, Debasish, Reddy, Timothy E., Rozowsky, Joel, Shoresh, Noam, Sidow, Arend, Slattery, Matthew, Stamatoyannopoulos, John A., Tolstorukov, Michael Y., White, Kevin P., Xi, Simon, Farnham, Peggy J., Lieb, Jason D., Wold, Barbara J., Snyder, Michael
Publicado 2012

A comparative encyclopedia of DNA elements in the mouse genome

por Yue, Feng, Cheng, Yong, Breschi, Alessandra, Vierstra, Jeff, Wu, Weisheng, Ryba, Tyrone, Sandstrom, Richard, Ma, Zhihai, Davis, Carrie, Pope, Benjamin D., Shen, Yin, Pervouchine, Dmitri D., Djebali, Sarah, Thurman, Robert E., Kaul, Rajinder, Rynes, Eric, Kirilusha, Anthony, Marinov, Georgi K., Williams, Brian A., Trout, Diane, Amrhein, Henry, Fisher-Aylor, Katherine, Antoshechkin, Igor, DeSalvo, Gilberto, See, Lei-Hoon, Fastuca, Meagan, Drenkow, Jorg, Zaleski, Chris, Dobin, Alex, Prieto, Pablo, Lagarde, Julien, Bussotti, Giovanni, Tanzer, Andrea, Denas, Olgert, Li, Kanwei, Bender, M. A., Zhang, Miaohua, Byron, Rachel, Groudine, Mark T., McCleary, David, Pham, Long, Ye, Zhen, Kuan, Samantha, Edsall, Lee, Wu, Yi-Chieh, Rasmussen, Matthew D., Bansal, Mukul S., Kellis, Manolis, Keller, Cheryl A., Morrissey, Christapher S., Mishra, Tejaswini, Jain, Deepti, Dogan, Nergiz, Harris, Robert S., Cayting, Philip, Kawli, Trupti, Boyle, Alan P., Euskirchen, Ghia, Kundaje, Anshul, Lin, Shin, Lin, Yiing, Jansen, Camden, Malladi, Venkat S., Cline, Melissa S., Erickson, Drew T., Kirkup, Vanessa M., Learned, Katrina, Sloan, Cricket A., Rosenbloom, Kate R., Lacerda de Sousa, Beatriz, Beal, Kathryn, Pignatelli, Miguel, Flicek, Paul, Lian, Jin, Kahveci, Tamer, Lee, Dongwon, James Kent, W., Ramalho Santos, Miguel, Herrero, Javier, Notredame, Cedric, Johnson, Audra, Vong, Shinny, Lee, Kristen, Bates, Daniel, Neri, Fidencio, Diegel, Morgan, Canfield, Theresa, Sabo, Peter J., Wilken, Matthew S., Reh, Thomas A., Giste, Erika, Shafer, Anthony, Kutyavin, Tanya, Haugen, Eric, Dunn, Douglas, Reynolds, Alex P., Neph, Shane, Humbert, Richard, Scott Hansen, R., De Bruijn, Marella, Selleri, Licia, Rudensky, Alexander, Josefowicz, Steven, Samstein, Robert, Eichler, Evan E., Orkin, Stuart H., Levasseur, Dana, Papayannopoulou, Thalia, Chang, Kai-Hsin, Skoultchi, Arthur, Gosh, Srikanta, Disteche, Christine, Treuting, Piper, Wang, Yanli, Weiss, Mitchell J., Blobel, Gerd A., Cao, Xiaoyi, Zhong, Sheng, Wang, Ting, Good, Peter J., Lowdon, Rebecca F., Adams, Leslie B., Zhou, Xiao-Qiao, Pazin, Michael J., Feingold, Elise A., Wold, Barbara, Taylor, James, Mortazavi, Ali, Weissman, Sherman M., Stamatoyannopoulos, John A., Snyder, Michael P., Guigo, Roderic, Gingeras, Thomas R., Gilbert, David M., Hardison, Ross C., Beer, Michael A., Ren, Bing
Publicado 2014