Transposable element detection from whole genome sequence data

por Ewing, Adam D.
Publicado 2015

Methylartist: tools for visualizing modified bases from nanopore sequence data

por Cheetham, Seth W, Kindlova, Michaela, Ewing, Adam D
Publicado 2022

Whole genome investigation of an atypical autism case identifies a novel ANOS1 mutation with subsequent diagnosis of Kallmann syndrome

por Dawson, Paul A., Lee, Soohyun, Ewing, Adam D., Prins, Johannes B., Heussler, Helen S.
Publicado 2020

An early proinflammatory transcriptional response to tau pathology is age‐specific and foreshadows reduced tau burden

por Rasmussen, Jay, Ewing, Adam D., Bodea, Liviu‐Gabriel, Bodea, Gabriela O., Gearing, Marla, Faulkner, Geoffrey J.
Publicado 2021

Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome

por Troskie, Robin-Lee, Jafrani, Yohaann, Mercer, Tim R., Ewing, Adam D., Faulkner, Geoffrey J., Cheetham, Seth W.
Publicado 2021

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes

por Ewing, Adam D, Ballinger, Tracy J, Earl, Dent, Harris, Christopher C, Ding, Li, Wilson, Richard K, Haussler, David
Publicado 2013

An evolutionary arms race between KRAB zinc finger genes 91/93 and SVA/L1 retrotransposons

por Jacobs, Frank MJ, Greenberg, David, Nguyen, Ngan, Haeussler, Maximilian, Ewing, Adam D, Katzman, Sol, Paten, Benedict, Salama, Sofie R, Haussler, David
Publicado 2014

Locus-resolution analysis of L1 regulation and retrotransposition potential in mouse embryonic development

por Gerdes, Patricia, Chan, Dorothy, Lundberg, Mischa, Sanchez-Luque, Francisco J., Bodea, Gabriela O., Ewing, Adam D., Faulkner, Geoffrey J., Richardson, Sandra R.
Publicado 2023

Dynamic Methylation of an L1 Transduction Family during Reprogramming and Neurodifferentiation

por Salvador-Palomeque, Carmen, Sanchez-Luque, Francisco J., Fortuna, Patrick R. J., Ewing, Adam D., Wolvetang, Ernst J., Richardson, Sandra R., Faulkner, Geoffrey J.
Publicado 2019

Microdeletion of 9q22.3: A patient with minimal deletion size associated with a severe phenotype

por Ewing, Adam D., Cheetham, Seth W., McGill, James J., Sharkey, Michael, Walker, Rick, West, Jennifer A., West, Malcolm J., Summers, Kim M.
Publicado 2021

Reading LINEs within the cocaine addicted brain

por Doyle, Glenn A., Doucet‐O'Hare, Tara T., Hammond, Matthew J., Crist, Richard C., Ewing, Adam D., Ferraro, Thomas N., Mash, Deborah C., Kazazian, Haig H., Berrettini, Wade H.
Publicado 2017

Germline contamination and leakage in whole genome somatic single nucleotide variant detection

por Sendorek, Dorota H., Caloian, Cristian, Ellrott, Kyle, Bare, J. Christopher, Yamaguchi, Takafumi N., Ewing, Adam D., Houlahan, Kathleen E., Norman, Thea C., Margolin, Adam A., Stuart, Joshua M., Boutros, Paul C.
Publicado 2018

Ubiquitous L1 Mosaicism in Hippocampal Neurons

por Upton, Kyle R., Gerhardt, Daniel J., Jesuadian, J. Samuel, Richardson, Sandra R., Sánchez-Luque, Francisco J., Bodea, Gabriela O., Ewing, Adam D., Salvador-Palomeque, Carmen, van der Knaap, Marjo S., Brennan, Paul M., Vanderver, Adeline, Faulkner, Geoffrey J.
Publicado 2015

No evidence of human genome integration of SARS-CoV-2 found by long-read DNA sequencing

por Smits, Nathan, Rasmussen, Jay, Bodea, Gabriela O., Amarilla, Alberto A., Gerdes, Patricia, Sanchez-Luque, Francisco J., Ajjikuttira, Prabha, Modhiran, Naphak, Liang, Benjamin, Faivre, Jamila, Deveson, Ira W., Khromykh, Alexander A., Watterson, Daniel, Ewing, Adam D., Faulkner, Geoffrey J.
Publicado 2021

Evidence for L1-associated DNA rearrangements and negligible L1 retrotransposition in glioblastoma multiforme

por Carreira, Patricia E., Ewing, Adam D., Li, Guibo, Schauer, Stephanie N., Upton, Kyle R., Fagg, Allister C., Morell, Santiago, Kindlova, Michaela, Gerdes, Patricia, Richardson, Sandra R., Li, Bo, Gerhardt, Daniel J., Wang, Jun, Brennan, Paul M., Faulkner, Geoffrey J.
Publicado 2016

Extensive somatic L1 retrotransposition in colorectal tumors

por Solyom, Szilvia, Ewing, Adam D., Rahrmann, Eric P., Doucet, Tara, Nelson, Heather H., Burns, Michael B., Harris, Reuben S., Sigmon, David F., Casella, Alex, Erlanger, Bracha, Wheelan, Sarah, Upton, Kyle R., Shukla, Ruchi, Faulkner, Geoffrey J., Largaespada, David A., Kazazian, Haig H.
Publicado 2012

L1 retrotransposition is a common feature of mammalian hepatocarcinogenesis

por Schauer, Stephanie N., Carreira, Patricia E., Shukla, Ruchi, Gerhardt, Daniel J., Gerdes, Patricia, Sanchez-Luque, Francisco J., Nicoli, Paola, Kindlova, Michaela, Ghisletti, Serena, Santos, Alexandre Dos, Rapoud, Delphine, Samuel, Didier, Faivre, Jamila, Ewing, Adam D., Richardson, Sandra R., Faulkner, Geoffrey J.
Publicado 2018

Retrotransposon instability dominates the acquired mutation landscape of mouse induced pluripotent stem cells

por Gerdes, Patricia, Lim, Sue Mei, Ewing, Adam D., Larcombe, Michael R., Chan, Dorothy, Sanchez-Luque, Francisco J., Walker, Lucinda, Carleton, Alexander L., James, Cini, Knaupp, Anja S., Carreira, Patricia E., Nefzger, Christian M., Lister, Ryan, Richardson, Sandra R., Polo, Jose M., Faulkner, Geoffrey J.
Publicado 2022

Heritable L1 retrotransposition in the mouse primordial germline and early embryo

por Richardson, Sandra R., Gerdes, Patricia, Gerhardt, Daniel J., Sanchez-Luque, Francisco J., Bodea, Gabriela-Oana, Muñoz-Lopez, Martin, Jesuadian, J. Samuel, Kempen, Marie-Jeanne H.C., Carreira, Patricia E., Jeddeloh, Jeffrey A., Garcia-Perez, Jose L., Kazazian, Haig H., Ewing, Adam D., Faulkner, Geoffrey J.
Publicado 2017

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

por Ewing, Adam D, Houlahan, Kathleen E, Hu, Yin, Ellrott, Kyle, Caloian, Cristian, Yamaguchi, Takafumi N, Bare, J Christopher, P’ng, Christine, Waggott, Daryl, Sabelnykova, Veronica Y, Kellen, Michael R, Norman, Thea C, Haussler, David, Friend, Stephen H, Stolovitzky, Gustavo, Margolin, Adam A, Stuart, Joshua M, Boutros, Paul C
Publicado 2015