Evaluation of Algorithm Performance in ChIP-Seq Peak Detection

por Wilbanks, Elizabeth G., Facciotti, Marc T.
Publicado 2010

Regulatory Multidimensionality of Gas Vesicle Biogenesis in Halobacterium salinarum NRC-1

por Yao, Andrew I., Facciotti, Marc T.
Publicado 2011

Schiff Base Switch II Precedes the Retinal Thermal Isomerization in the Photocycle of Bacteriorhodopsin

por Wang, Ting, Facciotti, Marc T., Duan, Yong
Publicado 2013

JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison

por Seitzer, Phillip, Huynh, Tu Anh, Facciotti, Marc T
Publicado 2013

The Exploration of Novel Regulatory Relationships Drives Haloarchaeal Operon-Like Structural Dynamics over Short Evolutionary Distances

por Seitzer, Phillip, Yao, Andrew I., Cisneros, Ariana, Facciotti, Marc T.
Publicado 2020

Mauve Assembly Metrics

por Darling, Aaron E., Tritt, Andrew, Eisen, Jonathan A., Facciotti, Marc T.
Publicado 2011

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

por Tritt, Andrew, Eisen, Jonathan A., Facciotti, Marc T., Darling, Aaron E.
Publicado 2012

A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs

por Seitzer, Phillip, Wilbanks, Elizabeth G, Larsen, David J, Facciotti, Marc T
Publicado 2012

Conserved Substitution Patterns around Nucleosome Footprints in Eukaryotes and Archaea Derive from Frequent Nucleosome Repositioning through Evolution

por Warnecke, Tobias, Becker, Erin A., Facciotti, Marc T., Nislow, Corey, Lehner, Ben
Publicado 2013

Stable Closure of the Cytoplasmic Half-Channel Is Required for Efficient Proton Transport at Physiological Membrane Potentials in the Bacteriorhodopsin Catalytic Cycle

por Wang, Ting, Oppawsky, Christoph, Duan, Yong, Tittor, Jörg, Oesterhelt, Dieter, Facciotti, Marc T.
Publicado 2014

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

por Bonneau, Richard, Reiss, David J, Shannon, Paul, Facciotti, Marc, Hood, Leroy, Baliga, Nitin S, Thorsson, Vesteinn
Publicado 2006

Gene Gangs of the Chloroviruses: Conserved Clusters of Collinear Monocistronic Genes

por Seitzer, Phillip, Jeanniard, Adrien, Ma, Fangrui, Van Etten, James L., Facciotti, Marc T., Dunigan, David D.
Publicado 2018

RiboTALE: A modular, inducible system for accurate gene expression control

por Rai, Navneet, Ferreiro, Aura, Neckelmann, Alexander, Soon, Amy, Yao, Andrew, Siegel, Justin, Facciotti, Marc T., Tagkopoulos, Ilias
Publicado 2015

Draft genome sequence of Halorubrum tropicale strain V5, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico

por Sánchez-Nieves, Rubén, Facciotti, Marc T., Saavedra-Collado, Sofía, Dávila-Santiago, Lizbeth, Rodríguez-Carrero, Roy, Montalvo-Rodríguez, Rafael
Publicado 2016

Draft genome of Haloarcula rubripromontorii strain SL3, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico

por Sánchez-Nieves, Rubén, Facciotti, Marc, Saavedra-Collado, Sofía, Dávila-Santiago, Lizbeth, Rodríguez-Carrero, Roy, Montalvo-Rodríguez, Rafael
Publicado 2016

A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq

por Wilbanks, Elizabeth G., Larsen, David J., Neches, Russell Y., Yao, Andrew I., Wu, Chia-Ying, Kjolby, Rachel A. S., Facciotti, Marc T.
Publicado 2012

A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site

por Becker, Erin A., Yao, Andrew I., Seitzer, Phillip M., Kind, Tobias, Wang, Ting, Eigenheer, Rich, Shao, Katie S. Y., Yarov-Yarovoy, Vladimir, Facciotti, Marc T.
Publicado 2016

The Effects of Practice-Based Training on Graduate Teaching Assistants’ Classroom Practices

por Becker, Erin A., Easlon, Erin J., Potter, Sarah C., Guzman-Alvarez, Alberto, Spear, Jensen M., Facciotti, Marc T., Igo, Michele M., Singer, Mitchell, Pagliarulo, Christopher
Publicado 2017

Evolution of context dependent regulation by expansion of feast/famine regulatory proteins

por Plaisier, Christopher L, Lo, Fang-Yin, Ashworth, Justin, Brooks, Aaron N, Beer, Karlyn D, Kaur, Amardeep, Pan, Min, Reiss, David J, Facciotti, Marc T, Baliga, Nitin S
Publicado 2014

Combining Microbial Culturing With Mathematical Modeling in an Introductory Course-Based Undergraduate Research Experience

por Furrow, Robert E., Kim, Hyunsoo G., Abdelrazek, Samah M. R., Dahlhausen, Katherine, Yao, Andrew I., Eisen, Jonathan A., Goldman, Mark S., Albeck, John G., Facciotti, Marc T.
Publicado 2020