Systematic comparison of two whole-genome amplification methods for targeted next-generation sequencing using frozen and FFPE normal and cancer tissues

por Mendez, Pedro, Fang, Li Tai, Jablons, David M., Kim, Il-Jin
Publicado 2017

LongISLND: in silico sequencing of lengthy and noisy datatypes

por Lau, Bayo, Mohiyuddin, Marghoob, Mu, John C., Fang, Li Tai, Bani Asadi, Narges, Dallett, Carolina, Lam, Hugo Y. K.
Publicado 2016

Methods for the purification and detection of single nucleotide KRAS mutations on extrachromosomal circular DNA in human plasma

por Bøllehuus Hansen, Lasse, Jakobsen, Sandra Fugl, Zole, Egija, Noer, Julie Boertmann, Fang, Li Tai, Alizadeh, Sefa, Johansen, Julia Sidenius, Mohiyuddin, Marghoob, Regenberg, Birgitte
Publicado 2023

Gremlin is Overexpressed in Lung Adenocarcinoma and Increases Cell Growth and Proliferation in Normal Lung Cells

por Mulvihill, Michael S., Kwon, Yong-Won, Lee, Sharon, Fang, Li Tai, Choi, Helen, Ray, Roshni, Kang, Hio Chung, Mao, Jian-Hua, Jablons, David, Kim, Il-Jin
Publicado 2012

Personalized genome assembly for accurate cancer somatic mutation discovery using tumor-normal paired reference samples

por Xiao, Chunlin, Chen, Zhong, Chen, Wanqiu, Padilla, Cory, Colgan, Michael, Wu, Wenjun, Fang, Li-Tai, Liu, Tiantian, Yang, Yibin, Schneider, Valerie, Wang, Charles, Xiao, Wenming
Publicado 2022

Achieving robust somatic mutation detection with deep learning models derived from reference data sets of a cancer sample

por Sahraeian, Sayed Mohammad Ebrahim, Fang, Li Tai, Karagiannis, Konstantinos, Moos, Malcolm, Smith, Sean, Santana-Quintero, Luis, Xiao, Chunlin, Colgan, Michael, Hong, Huixiao, Mohiyuddin, Marghoob, Xiao, Wenming
Publicado 2022

Whole exome and targeted deep sequencing identify genome-wide allelic loss and frequent SETDB1 mutations in malignant pleural mesotheliomas

por Kang, Hio Chung, Kim, Hong Kwan, Lee, Sharon, Mendez, Pedro, Kim, James Wansoo, Woodard, Gavitt, Yoon, Jun-Hee, Jen, Kuang-Yu, Fang, Li Tai, Jones, Kirk, Jablons, David M., Kim, Il-Jin
Publicado 2016

Gene Expression Scoring of Immune Activity Levels for Precision Use of Hydrocortisone in Vasodilatory Shock

por Yao, Lijing, Rey, Diego Ariel, Bulgarelli, Lucas, Kast, Rachel, Osborn, Jeff, Van Ark, Emily, Fang, Li Tai, Lau, Bayo, Lam, Hugo, Teixeira, Leonardo Maestri, Neto, Ary Serpa, Bellomo, Rinaldo, Deliberato, Rodrigo Octávio
Publicado 2022

CK2α, over-expressed in human malignant pleural mesothelioma, regulates the Hedgehog signaling pathway in mesothelioma cells

por Zhang, Shulin, Yang, Yi-Lin, Wang, Yucheng, You, Bin, Dai, Yuyuan, Chan, Geraldine, Hsieh, David, Kim, Il-Jin, Fang, Li Tai, Au, Alfred, Stoppler, Hubert J, Xu, Zhidong, Jablons, David M, You, Liang
Publicado 2014

An ensemble approach to accurately detect somatic mutations using SomaticSeq

por Fang, Li Tai, Afshar, Pegah Tootoonchi, Chhibber, Aparna, Mohiyuddin, Marghoob, Fan, Yu, Mu, John C., Gibeling, Greg, Barr, Sharon, Asadi, Narges Bani, Gerstein, Mark B., Koboldt, Daniel C., Wang, Wenyi, Wong, Wing H., Lam, Hugo YK
Publicado 2015

Targeting Gli Transcription Activation by Small Molecule Suppresses Tumor Growth

por Bosco-Clément, Geneviève, Zhang, Fang, Chen, Zhao, Zhou, Hai-Meng, Li, Hui, Mikami, Iwao, Hirata, Tomomi, Yagui-Beltran, Adam, Lui, Natalie, Do, Hanh T., Cheng, Tiffany, Tseng, Hsin-Hui, Choi, Helen, Fang, Li-Tai, Kim, Il-Jin, Yue, Dongsheng, Wang, Changli, Zheng, Qingfeng, Fujii, Naoaki, Mann, Michael, Jablons, David M., He, Biao
Publicado 2013

Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study

por Zhao, Yongmei, Fang, Li Tai, Shen, Tsai-wei, Choudhari, Sulbha, Talsania, Keyur, Chen, Xiongfong, Shetty, Jyoti, Kriga, Yuliya, Tran, Bao, Zhu, Bin, Chen, Zhong, Chen, Wanqiu, Wang, Charles, Jaeger, Erich, Meerzaman, Daoud, Lu, Charles, Idler, Kenneth, Ren, Luyao, Zheng, Yuanting, Shi, Leming, Petitjean, Virginie, Sultan, Marc, Hung, Tiffany, Peters, Eric, Drabek, Jiri, Vojta, Petr, Maestro, Roberta, Gasparotto, Daniela, Kõks, Sulev, Reimann, Ene, Scherer, Andreas, Nordlund, Jessica, Liljedahl, Ulrika, Foox, Jonathan, Mason, Christopher E., Xiao, Chunlin, Hong, Huixiao, Xiao, Wenming
Publicado 2021

Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

por Talsania, Keyur, Shen, Tsai-wei, Chen, Xiongfong, Jaeger, Erich, Li, Zhipan, Chen, Zhong, Chen, Wanqiu, Tran, Bao, Kusko, Rebecca, Wang, Limin, Pang, Andy Wing Chun, Yang, Zhaowei, Choudhari, Sulbha, Colgan, Michael, Fang, Li Tai, Carroll, Andrew, Shetty, Jyoti, Kriga, Yuliya, German, Oksana, Smirnova, Tatyana, Liu, Tiantain, Li, Jing, Kellman, Ben, Hong, Karl, Hastie, Alex R., Natarajan, Aparna, Moshrefi, Ali, Granat, Anastasiya, Truong, Tiffany, Bombardi, Robin, Mankinen, Veronnica, Meerzaman, Daoud, Mason, Christopher E., Collins, Jack, Stahlberg, Eric, Xiao, Chunlin, Wang, Charles, Xiao, Wenming, Zhao, Yongmei
Publicado 2022

PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions

por Olson, Nathan D., Wagner, Justin, McDaniel, Jennifer, Stephens, Sarah H., Westreich, Samuel T., Prasanna, Anish G., Johanson, Elaine, Boja, Emily, Maier, Ezekiel J., Serang, Omar, Jáspez, David, Lorenzo-Salazar, José M., Muñoz-Barrera, Adrián, Rubio-Rodríguez, Luis A., Flores, Carlos, Kyriakidis, Konstantinos, Malousi, Andigoni, Shafin, Kishwar, Pesout, Trevor, Jain, Miten, Paten, Benedict, Chang, Pi-Chuan, Kolesnikov, Alexey, Nattestad, Maria, Baid, Gunjan, Goel, Sidharth, Yang, Howard, Carroll, Andrew, Eveleigh, Robert, Bourgey, Mathieu, Bourque, Guillaume, Li, Gen, Ma, ChouXian, Tang, LinQi, Du, YuanPing, Zhang, ShaoWei, Morata, Jordi, Tonda, Raúl, Parra, Genís, Trotta, Jean-Rémi, Brueffer, Christian, Demirkaya-Budak, Sinem, Kabakci-Zorlu, Duygu, Turgut, Deniz, Kalay, Özem, Budak, Gungor, Narcı, Kübra, Arslan, Elif, Brown, Richard, Johnson, Ivan J., Dolgoborodov, Alexey, Semenyuk, Vladimir, Jain, Amit, Tetikol, H. Serhat, Jain, Varun, Ruehle, Mike, Lajoie, Bryan, Roddey, Cooper, Catreux, Severine, Mehio, Rami, Ahsan, Mian Umair, Liu, Qian, Wang, Kai, Ebrahim Sahraeian, Sayed Mohammad, Fang, Li Tai, Mohiyuddin, Marghoob, Hung, Calvin, Jain, Chirag, Feng, Hanying, Li, Zhipan, Chen, Luoqi, Sedlazeck, Fritz J., Zook, Justin M.
Publicado 2022