ORSO (Online Resource for Social Omics): A data-driven social network connecting scientists to genomics datasets

por Lavender, Christopher A., Shapiro, Andrew J., Day, Frank S., Fargo, David C.
Publicado 2020

SIRT1 regulates cardiomyocyte alignment during maturation

por Fang, Yi, Fan, Wei, Xu, Xiaojiang, Janoshazi, Agnes K., Fargo, David C., Li, Xiaoling
Publicado 2022

ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data

por Lavender, Christopher A., Shapiro, Andrew J., Burkholder, Adam B., Bennett, Brian D., Adelman, Karen, Fargo, David C.
Publicado 2017

Muver, a computational framework for accurately calling accumulated mutations

por Burkholder, Adam B., Lujan, Scott A., Lavender, Christopher A., Grimm, Sara A., Kunkel, Thomas A., Fargo, David C.
Publicado 2018

A Novel Analytical Strategy to Identify Fusion Transcripts between Repetitive Elements and Protein Coding-Exons Using RNA-Seq

por Wang, Tianyuan, Santos, Janine H., Feng, Jian, Fargo, David C., Shen, Li, Riadi, Gonzalo, Keeley, Elizabeth, Rosh, Zachary S., Nestler, Eric J., Woychik, Richard P.
Publicado 2016

Widespread transcriptional pausing and elongation control at enhancers

por Henriques, Telmo, Scruggs, Benjamin S., Inouye, Michiko O., Muse, Ginger W., Williams, Lucy H., Burkholder, Adam B., Lavender, Christopher A., Fargo, David C., Adelman, Karen
Publicado 2018

The skin is no barrier to mixtures: Air pollutant mixtures and reported psoriasis or eczema in the Personalized Environment and Genes Study (PEGS)

por Lowe, Melissa E., Akhtari, Farida S., Potter, Taylor A., Fargo, David C., Schmitt, Charles P., Schurman, Shepherd H., Eccles, Kristin M., Motsinger-Reif, Alison, Hall, Janet E., Messier, Kyle P.
Publicado 2022

INO80 governs superenhancer-mediated oncogenic transcription and tumor growth in melanoma

por Zhou, Bingying, Wang, Li, Zhang, Shu, Bennett, Brian D., He, Fan, Zhang, Yan, Xiong, Chengliang, Han, Leng, Diao, Lixia, Li, Pishun, Fargo, David C., Cox, Adrienne D., Hu, Guang
Publicado 2016

Questionnaire-Based Polyexposure Assessment Outperforms Polygenic Scores for Classification of Type 2 Diabetes in a Multiancestry Cohort

por Akhtari, Farida S., Lloyd, Dillon, Burkholder, Adam, Tong, Xiaoran, House, John S., Lee, Eunice Y., Buse, John, Schurman, Shepherd H., Fargo, David C., Schmitt, Charles P., Hall, Janet, Motsinger-Reif, Alison A.
Publicado 2023

Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters

por Lavender, Christopher A., Cannady, Kimberly R., Hoffman, Jackson A., Trotter, Kevin W., Gilchrist, Daniel A., Bennett, Brian D., Burkholder, Adam B., Burd, Craig J., Fargo, David C., Archer, Trevor K.
Publicado 2016

Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation

por Clausen, Anders R., Lujan, Scott A., Burkholder, Adam B., Orebaugh, Clinton D., Williams, Jessica S., Clausen, Maryam F., Malc, Ewa P., Mieczkowski, Piotr A., Fargo, David C., Smith, Duncan J., Kunkel, Thomas A.
Publicado 2015

An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers

por Chan, Kin, Roberts, Steven A., Klimczak, Leszek J., Sterling, Joan F., Saini, Natalie, Malc, Ewa P., Kim, Jaegil, Kwiatkowski, David J., Fargo, David C., Mieczkowski, Piotr A., Getz, Gad, Gordenin, Dmitry A.
Publicado 2015

A Serial shRNA Screen for Roadblocks to Reprogramming Identifies the Protein Modifier SUMO2

por Borkent, Marti, Bennett, Brian D., Lackford, Brad, Bar-Nur, Ori, Brumbaugh, Justin, Wang, Li, Du, Ying, Fargo, David C., Apostolou, Effie, Cheloufi, Sihem, Maherali, Nimet, Elledge, Stephen J., Hu, Guang, Hochedlinger, Konrad
Publicado 2016

CNOT3-Dependent mRNA Deadenylation Safeguards the Pluripotent State

por Zheng, Xiaofeng, Yang, Pengyi, Lackford, Brad, Bennett, Brian D., Wang, Li, Li, Hui, Wang, Yu, Miao, Yiliang, Foley, Julie F., Fargo, David C., Jin, Ying, Williams, Carmen J., Jothi, Raja, Hu, Guang
Publicado 2016

UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skin

por Saini, Natalie, Giacobone, Camille K., Klimczak, Leszek J., Papas, Brian N., Burkholder, Adam B., Li, Jian-Liang, Fargo, David C., Bai, Re, Gerrish, Kevin, Innes, Cynthia L., Schurman, Shepherd H., Gordenin, Dmitry A.
Publicado 2021

Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition

por Lujan, Scott A., Clausen, Anders R., Clark, Alan B., MacAlpine, Heather K., MacAlpine, David M., Malc, Ewa P., Mieczkowski, Piotr A., Burkholder, Adam B., Fargo, David C., Gordenin, Dmitry A., Kunkel, Thomas A.
Publicado 2014

Revealing a human p53 universe

por Nguyen, Thuy-Ai T, Grimm, Sara A, Bushel, Pierre R, Li, Jianying, Li, Yuanyuan, Bennett, Brian D, Lavender, Christopher A, Ward, James M, Fargo, David C, Anderson, Carl W, Li, Leping, Resnick, Michael A, Menendez, Daniel
Publicado 2018

Ancestry-dependent gene expression correlates with reprogramming to pluripotency and multiple dynamic biological processes

por Bisogno, Laura S., Yang, Jun, Bennett, Brian D., Ward, James M., Mackey, Lantz C., Annab, Lois A., Bushel, Pierre R., Singhal, Sandeep, Schurman, Shepherd H., Byun, Jung S., Nápoles, Anna María, Pérez-Stable, Eliseo J., Fargo, David C., Gardner, Kevin, Archer, Trevor K.
Publicado 2020

The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts

por Saini, Natalie, Roberts, Steven A., Klimczak, Leszek J., Chan, Kin, Grimm, Sara A., Dai, Shuangshuang, Fargo, David C., Boyer, Jayne C., Kaufmann, William K., Taylor, Jack A., Lee, Eunjung, Cortes-Ciriano, Isidro, Park, Peter J., Schurman, Shepherd H., Malc, Ewa P., Mieczkowski, Piotr A., Gordenin, Dmitry A.
Publicado 2016

Race/ethnicity-stratified fine-mapping of the MHC locus reveals genetic variants associated with late-onset asthma

por Lee, Eunice Y., Choi, Wonson, Burkholder, Adam B., Perera, Lalith, Mack, Jasmine A., Miller, Frederick W., Fessler, Michael B., Cook, Donald N., Karmaus, Peer W. F., Nakano, Hideki, Garantziotis, Stavros, Madenspacher, Jennifer H., House, John S., Akhtari, Farida S., Schmitt, Charles S., Fargo, David C., Hall, Janet E., Motsinger-Reif, Alison A.
Publicado 2023