Globally diverse Mycobacterium tuberculosis resistance acquisition: a retrospective geographical and temporal analysis of whole genome sequences

por Ektefaie, Yasha, Dixit, Avika, Freschi, Luca, Farhat, Maha R
Publicado 2021

High Throughput Sequencing for Clinical Tuberculosis: An Overview

por Ness, Tara E., DiNardo, Andrew, Farhat, Maha R.
Publicado 2022

A phylogeny-based sampling strategy and power calculator informs genome-wide associations study design for microbial pathogens

por Farhat, Maha R, Shapiro, B Jesse, Sheppard, Samuel K, Colijn, Caroline, Murray, Megan
Publicado 2014

Analysis of Genome-Wide Mutational Dependence in Naturally Evolving Mycobacterium tuberculosis Populations

por Green, Anna G, Vargas, Roger, Marin, Maximillian G, Freschi, Luca, Xie, Jiaqi, Farhat, Maha R
Publicado 2023

A comparison of early versus late initiation of renal replacement therapy in critically ill patients with acute kidney injury: a systematic review and meta-analysis

por Karvellas, Constantine J, Farhat, Maha R, Sajjad, Imran, Mogensen, Simon S, Leung, Alexander A, Wald, Ron, Bagshaw, Sean M
Publicado 2011

GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning

por Gröschel, Matthias I., Owens, Martin, Freschi, Luca, Vargas, Roger, Marin, Maximilian G., Phelan, Jody, Iqbal, Zamin, Dixit, Avika, Farhat, Maha R.
Publicado 2021

Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production

por Colijn, Caroline, Brandes, Aaron, Zucker, Jeremy, Lun, Desmond S., Weiner, Brian, Farhat, Maha R., Cheng, Tan-Yun, Moody, D. Branch, Murray, Megan, Galagan, James E.
Publicado 2009

Whole genome sequencing identifies bacterial factors affecting transmission of multidrug-resistant tuberculosis in a high-prevalence setting

por Dixit, Avika, Freschi, Luca, Vargas, Roger, Calderon, Roger, Sacchettini, James, Drobniewski, Francis, Galea, Jerome T., Contreras, Carmen, Yataco, Rosa, Zhang, Zibiao, Lecca, Leonid, Kolokotronis, Sergios-Orestis, Mathema, Barun, Farhat, Maha R.
Publicado 2019

GWAS for quantitative resistance phenotypes in Mycobacterium tuberculosis reveals resistance genes and regulatory regions

por Farhat, Maha R., Freschi, Luca, Calderon, Roger, Ioerger, Thomas, Snyder, Matthew, Meehan, Conor J., de Jong, Bouke, Rigouts, Leen, Sloutsky, Alex, Kaur, Devinder, Sunyaev, Shamil, van Soolingen, Dick, Shendure, Jay, Sacchettini, Jim, Murray, Megan
Publicado 2019

Rethinking global digital health and AI-for-health innovation challenges

por Farlow, Andrew, Hoffmann, Alexander, Tadesse, Girmaw Abebe, Mzurikwao, Deogratias, Beyer, Rob, Akogo, Darlington, Weicken, Eva, Matika, Tafadzwa, Nweje, MaryJane Ijeoma, Wamae, Watu, Arts, Sako, Wiegand, Thomas, Bennett, Colin, Farhat, Maha R., Gröschel, Matthias I.
Publicado 2023

Tuberculosis Pathways to Care and Transmission of Multidrug Resistance in India

por Atre, Sachin R., Jagtap, Jayshri D., Faqih, Mujtaba I., Dumbare, Yogita K., Sawant, Trupti U., Ambike, Sunil L., Bhawalkar, Jitendra S., Bharaswadkar, Sandeep K., Jogewar, Padmaja K., Adkekar, Ramji S., Hodgar, Balasaheb P., Jadhav, Vaishali, Mokashi, Nitin D., Golub, Jonathan E., Dixit, Avika, Farhat, Maha R.
Publicado 2021

The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis

por Walker, Timothy M, Miotto, Paolo, Köser, Claudio U, Fowler, Philip W, Knaggs, Jeff, Iqbal, Zamin, Hunt, Martin, Chindelevitch, Leonid, Farhat, Maha R, Cirillo, Daniela Maria, Comas, Iñaki, Posey, James, Omar, Shaheed V, Peto, Timothy EA, Suresh, Anita, Uplekar, Swapna, Laurent, Sacha, Colman, Rebecca E, Nathanson, Carl-Michael, Zignol, Matteo, Walker, Ann Sarah, Crook, Derrick W, Ismail, Nazir, Rodwell, Timothy C
Publicado 2022

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

por Hunt, Martin, Bradley, Phelim, Lapierre, Simon Grandjean, Heys, Simon, Thomsit, Mark, Hall, Michael B., Malone, Kerri M., Wintringer, Penelope, Walker, Timothy M., Cirillo, Daniela M., Comas, Iñaki, Farhat, Maha R., Fowler, Phillip, Gardy, Jennifer, Ismail, Nazir, Kohl, Thomas A., Mathys, Vanessa, Merker, Matthias, Niemann, Stefan, Omar, Shaheed Vally, Sintchenko, Vitali, Smith, Grace, van Soolingen, Dick, Supply, Philip, Tahseen, Sabira, Wilcox, Mark, Arandjelovic, Irena, Peto, Tim E. A., Crook, Derrick W., Iqbal, Zamin
Publicado 2019

Genomic Analysis Identifies Targets of Convergent Positive Selection in Drug Resistant Mycobacterium tuberculosis

por Farhat, Maha R, Shapiro, B Jesse, Kieser, Karen J, Sultana, Razvan, Jacobson, Karen R, Victor, Thomas C, Warren, Robin M, Streicher, Elizabeth M, Calver, Alistair, Sloutsky, Alex, Kaur, Devinder, Posey, Jamie E, Plikaytis, Bonnie, Oggioni, Marco R, Gardy, Jennifer L, Johnston, James C, Rodrigues, Mabel, Tang, Patrick K C, Kato-Maeda, Midori, Borowsky, Mark L, Muddukrishna, Bhavana, Kreiswirth, Barry N, Kurepina, Natalia, Galagan, James, Gagneux, Sebastien, Birren, Bruce, Rubin, Eric J, Lander, Eric S, Sabeti, Pardis C, Murray, Megan
Publicado 2013

The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia

por Gröschel, Matthias I., Meehan, Conor J., Barilar, Ivan, Diricks, Margo, Gonzaga, Aitor, Steglich, Matthias, Conchillo-Solé, Oscar, Scherer, Isabell-Christin, Mamat, Uwe, Luz, Christian F., De Bruyne, Katrien, Utpatel, Christian, Yero, Daniel, Gibert, Isidre, Daura, Xavier, Kampmeier, Stefanie, Rahman, Nurdyana Abdul, Kresken, Michael, van der Werf, Tjip S., Alio, Ifey, Streit, Wolfgang R., Zhou, Kai, Schwartz, Thomas, Rossen, John W. A., Farhat, Maha R., Schaible, Ulrich E., Nübel, Ulrich, Rupp, Jan, Steinmann, Joerg, Niemann, Stefan, Kohl, Thomas A.
Publicado 2020