Using multiple sampling strategies to estimate SARS-CoV-2 epidemiological parameters from genomic sequencing data

por Inward, Rhys P. D., Parag, Kris V., Faria, Nuno R.
Publicado 2022

Altered demographic profile of hospitalizations during the second COVID-19 wave in Amazonas, Brazil

por Whittaker, Charles, Ratmann, Oliver, Dye, Christopher, Sabino, Ester C., Faria, Nuno R.
Publicado 2021

Challenges in dengue research: A computational perspective

por Lourenço, José, Tennant, Warren, Faria, Nuno R., Walker, Andrew, Gupta, Sunetra, Recker, Mario
Publicado 2017

Rooting human parechovirus evolution in time

por Faria, Nuno R, de Vries, Michel, van Hemert, Formijn J, Benschop, Kimberley, van der Hoek, Lia
Publicado 2009

MVSE: An R‐package that estimates a climate‐driven mosquito‐borne viral suitability index

por Obolski, Uri, Perez, Pablo N., Villabona‐Arenas, Christian J., Thézé, Julien, Faria, Nuno R., Lourenço, José
Publicado 2019

Relax, Keep Walking — A Practical Guide to Continuous Phylogeographic Inference with BEAST

por Dellicour, Simon, Gill, Mandev S, Faria, Nuno R, Rambaut, Andrew, Pybus, Oliver G, Suchard, Marc A, Lemey, Philippe
Publicado 2021

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

por Dellicour, Simon, Baele, Guy, Dudas, Gytis, Faria, Nuno R., Pybus, Oliver G., Suchard, Marc A., Rambaut, Andrew, Lemey, Philippe
Publicado 2018

The Changing Epidemiological Profile of HIV-1 Subtype B Epidemic in Ukraine

por Vasylyeva, Tetyana I., Liulchuk, Mariia, du Plessis, Louis, Fearnhill, Esther, Zadorozhna, Victoriia, Babii, Nataliia, Scherbinska, Alla, Novitsky, Vladimir, Pybus, Oliver G., Faria, Nuno R.
Publicado 2019

First Report of Wenzhou sobemo-like virus 4 in Aedes albopictus (Diptera: Culicidae) in Latin America

por Andrade, Pâmela S., Valença, Ian N., Heinisch, Marta R. S., Rocha, Esmenia C., Fernandes, Lícia N., Faria, Nuno R., Sabino, Ester C., Lima-Camara, Tamara N.
Publicado 2022

Evolutionary Dynamics of Oropouche Virus in South America

por Gutierrez, Bernardo, Wise, Emma L., Pullan, Steven T., Logue, Christopher H., Bowden, Thomas A., Escalera-Zamudio, Marina, Trueba, Gabriel, Nunes, Marcio R. T., Faria, Nuno R., Pybus, Oliver G.
Publicado 2020

Routes for COVID-19 importation in Brazil

por Candido, Darlan Da S, Watts, Alexander, Abade, Leandro, Kraemer, Moritz U G, Pybus, Oliver G, Croda, Julio, de Oliveira, Wanderson, Khan, Kamran, Sabino, Ester C, Faria, Nuno R
Publicado 2020

Single Cell Analysis of Lymph Node Tissue from HIV-1 Infected Patients Reveals that the Majority of CD4(+) T-cells Contain One HIV-1 DNA Molecule

por Josefsson, Lina, Palmer, Sarah, Faria, Nuno R., Lemey, Philippe, Casazza, Joseph, Ambrozak, David, Kearney, Mary, Shao, Wei, Kottilil, Shyamasundaran, Sneller, Michael, Mellors, John, Coffin, John M., Maldarelli, Frank
Publicado 2013

Distinct Zika Virus Lineage in Salvador, Bahia, Brazil

por Naccache, Samia N., Thézé, Julien, Sardi, Silvia I., Somasekar, Sneha, Greninger, Alexander L., Bandeira, Antonio C., Campos, Gubio S., Tauro, Laura B., Faria, Nuno R., Pybus, Oliver G., Chiu, Charles Y.
Publicado 2016

Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology

por Vasylyeva, Tetyana I, du Plessis, Louis, Pineda-Peña, Andrea C, Kühnert, Denise, Lemey, Philippe, Vandamme, Anne-Mieke, Gomes, Perpétua, Camacho, Ricardo J, Pybus, Oliver G, Abecasis, Ana B, Faria, Nuno R
Publicado 2019

Dataset on SARS-CoV-2 non-pharmaceutical interventions in Brazilian municipalities

por de Souza Santos, Andreza Aruska, Candido, Darlan da Silva, de Souza, William Marciel, Buss, Lewis, Li, Sabrina L., Pereira, Rafael H. M., Wu, Chieh-Hsi, Sabino, Ester C., Faria, Nuno R.
Publicado 2021

Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America

por Gutierrez, Bernardo, Castelán Sánchez, Hugo G., Candido, Darlan da Silva, Jackson, Ben, Fleishon, Shay, Houzet, Renaud, Ruis, Christopher, Delaye, Luis, Faria, Nuno R., Rambaut, Andrew, Pybus, Oliver G., Escalera-Zamudio, Marina
Publicado 2022

Epidemiology of COVID-19 after Emergence of SARS-CoV-2 Gamma Variant, Brazilian Amazon, 2020–2021

por Nicolete, Vanessa C., Rodrigues, Priscila T., Fernandes, Anderson R.J., Corder, Rodrigo M., Tonini, Juliana, Buss, Lewis F., Sales, Flávia C., Faria, Nuno R., Sabino, Ester C., Castro, Marcia C., Ferreira, Marcelo U.
Publicado 2022

A10 The evolution and molecular epidemiology of epidemic GII.17 noroviruses

por Lu, Jing, Fang, Lin, Zheng, Huanying, Lao, Jiaqian, Yang, Feng, Sun, Limei, Xiao, Jianpeng, Lin, Jinyan, Song, Tie, Raghwani, Jayna, Ke, Changwen, Faria, Nuno R., Bowden, Thomas A., Pybus, Oliver G., Li, Hui
Publicado 2017

Molecular archaeoparasitology identifies cultural changes in the Medieval Hanseatic trading centre of Lübeck

por Flammer, Patrik G., Dellicour, Simon, Preston, Stephen G., Rieger, Dirk, Warren, Sylvia, Tan, Cedric K. W., Nicholson, Rebecca, Přichystalová, Renáta, Bleicher, Niels, Wahl, Joachim, Faria, Nuno R., Pybus, Oliver G., Pollard, Mark, Smith, Adrian L.
Publicado 2018

Tracking the emergence of disparities in the subnational spread of COVID-19 in Brazil using an online application for real-time data visualisation: A longitudinal analysis

por Mee, Paul, Alexander, Neal, Mayaud, Philippe, González, Felipe de Jesus Colón, Abbott, Sam, Santos, Andreza Aruska de Souza, Acosta, André Luís, Parag, Kris V., Pereira, Rafael H.M., Prete, Carlos A., Sabino, Ester C., Faria, Nuno R., Brady, Oliver J
Publicado 2021