Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes

por Cleary, Alan M, Farmer, Andrew D
Publicado 2023

Expression Partitioning of Duplicate Genes at Single Cell Resolution in Arabidopsis Roots

por Coate, Jeremy E., Farmer, Andrew D., Schiefelbein, John W., Doyle, Jeff J.
Publicado 2020

Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress

por Belamkar, Vikas, Weeks, Nathan T, Bharti, Arvind K, Farmer, Andrew D, Graham, Michelle A, Cannon, Steven B
Publicado 2014

Genomics-assisted characterization of a breeding collection of Apios americana, an edible tuberous legume

por Belamkar, Vikas, Farmer, Andrew D., Weeks, Nathan T., Kalberer, Scott R., Blackmon, William J., Cannon, Steven B.
Publicado 2016

Anilinopyrimidine Resistance in Botrytis cinerea Is Linked to Mitochondrial Function

por Mosbach, Andreas, Edel, Dominique, Farmer, Andrew D., Widdison, Stephanie, Barchietto, Thierry, Dietrich, Robert A., Corran, Andy, Scalliet, Gabriel
Publicado 2017

Development of an Alfalfa SNP Array and Its Use to Evaluate Patterns of Population Structure and Linkage Disequilibrium

por Li, Xuehui, Han, Yuanhong, Wei, Yanling, Acharya, Ananta, Farmer, Andrew D., Ho, Julie, Monteros, Maria J., Brummer, E. Charles
Publicado 2014

Ten simple rules for developing visualization tools in genomics

por Durant, Eloi, Rouard, Mathieu, Ganko, Eric W., Muller, Cedric, Cleary, Alan M., Farmer, Andrew D., Conte, Matthieu, Sabot, Francois
Publicado 2022

Polyploidy Did Not Predate the Evolution of Nodulation in All Legumes

por Cannon, Steven B., Ilut, Dan, Farmer, Andrew D., Maki, Sonja L., May, Gregory D., Singer, Susan R., Doyle, Jeff J.
Publicado 2010

Characterization of a set of novel meiotically-active promoters in Arabidopsis

por Li, Junhua, Farmer, Andrew D, Lindquist, Ingrid E, Dukowic-Schulze, Stefanie, Mudge, Joann, Li, Tao, Retzel, Ernest F, Chen, Changbin
Publicado 2012

A transcriptome-SNP-derived linkage map of Apios americana (potato bean) provides insights about genome re-organization and synteny conservation in the phaseoloid legumes

por Singh, Jugpreet, Kalberer, Scott R., Belamkar, Vikas, Assefa, Teshale, Nelson, Matthew N., Farmer, Andrew D., Blackmon, William J., Cannon, Steven B.
Publicado 2017

A genome-wide association and meta-analysis reveal regions associated with seed size in cowpea [Vigna unguiculata (L.) Walp]

por Lo, Sassoum, Muñoz-Amatriaín, María, Hokin, Samuel A., Cisse, Ndiaga, Roberts, Philip A., Farmer, Andrew D., Xu, Shizhong, Close, Timothy J.
Publicado 2019

Genetic mapping of legume orthologs reveals high conservation of synteny between lentil species and the sequenced genomes of Medicago and chickpea

por Gujaria-Verma, Neha, Vail, Sally L., Carrasquilla-Garcia, Noelia, Penmetsa, R. Varma, Cook, Douglas R., Farmer, Andrew D., Vandenberg, Albert, Bett, Kirstin E.
Publicado 2014

Small RNA profiles in soybean primary root tips under water deficit

por Zheng, Yun, Hivrale, Vandana, Zhang, Xiaotuo, Valliyodan, Babu, Lelandais-Brière, Christine, Farmer, Andrew D., May, Gregory D., Crespi, Martin, Nguyen, Henry T., Sunkar, Ramanjulu
Publicado 2016

Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes

por Chen, Changbin, Farmer, Andrew D, Langley, Raymond J, Mudge, Joann, Crow, John A, May, Gregory D, Huntley, James, Smith, Alan G, Retzel, Ernest F
Publicado 2010

Population Genomics of the Facultatively Mutualistic Bacteria Sinorhizobium meliloti and S. medicae

por Epstein, Brendan, Branca, Antoine, Mudge, Joann, Bharti, Arvind K., Briskine, Roman, Farmer, Andrew D., Sugawara, Masayuki, Young, Nevin D., Sadowsky, Michael J., Tiffin, Peter
Publicado 2012

Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

por Kudapa, Himabindu, Azam, Sarwar, Sharpe, Andrew G., Taran, Bunyamin, Li, Rong, Deonovic, Benjamin, Cameron, Connor, Farmer, Andrew D., Cannon, Steven B., Varshney, Rajeev K.
Publicado 2014

Uneven recombination rate and linkage disequilibrium across a reference SNP map for common bean (Phaseolus vulgaris L.)

por Blair, Matthew W., Cortés, Andrés J., Farmer, Andrew D., Huang, Wei, Ambachew, Daniel, Penmetsa, R. Varma, Carrasquilla-Garcia, Noelia, Assefa, Teshale, Cannon, Steven B.
Publicado 2018

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence

por Hyten, David L, Cannon, Steven B, Song, Qijian, Weeks, Nathan, Fickus, Edward W, Shoemaker, Randy C, Specht, James E, Farmer, Andrew D, May, Gregory D, Cregan, Perry B
Publicado 2010

The transcriptome landscape of early maize meiosis

por Dukowic-Schulze, Stefanie, Sundararajan, Anitha, Mudge, Joann, Ramaraj, Thiruvarangan, Farmer, Andrew D, Wang, Minghui, Sun, Qi, Pillardy, Jaroslaw, Kianian, Shahryar, Retzel, Ernest F, Pawlowski, Wojciech P, Chen, Changbin
Publicado 2014

Correction to: The transcriptome landscape of early maize meiosis

por Dukowic-Schulze, Stefanie, Sundararajan, Anitha, Mudge, Joann, Ramaraj, Thiruvarangan, Farmer, Andrew D., Wang, Minghui, Sun, Qi, Pillardy, Jaroslaw, Kianian, Shahryar, Retzel, Ernest F., Pawlowski, Wojciech P., Chen, Changbin
Publicado 2018