NADcapPro and circNC: methods for accurate profiling of NAD and non-canonical RNA caps in eukaryotes

por Sharma, Sunny, Yang, Jun, Favate, John, Shah, Premal, Kiledjian, Megerditch
Publicado 2023

The landscape of transcriptional and translational changes over 22 years of bacterial adaptation

por Favate, John S, Liang, Shun, Cope, Alexander L, Yadavalli, Srujana S, Shah, Premal
Publicado 2022

Linking genotypic and phenotypic changes in the E. coli Long-Term Evolution Experiment using metabolomics

por Favate, John S., Skalenko, Kyle S., Chiles, Eric, Su, Xiaoyang, Yadavalli, Srujana S., Shah, Premal
Publicado 2023

Linking genotypic and phenotypic changes in the E. coli long-term evolution experiment using metabolomics

por Favate, John S, Skalenko, Kyle S, Chiles, Eric, Su, Xiaoyang, Yadavalli, Srujana Samhita, Shah, Premal
Publicado 2023

Reply to: Potential contribution of PEP carboxykinase-dependent malate dismutation to the hypoxia response in C. elegans

por Vora, Mehul, Pyonteck, Stephanie M., Popovitchenko, Tatiana, Matlack, Tarmie L., Prashar, Aparna, Kane, Nanci S., Favate, John, Shah, Premal, Rongo, Christopher
Publicado 2023

The hypoxia response pathway promotes PEP carboxykinase and gluconeogenesis in C. elegans

por Vora, Mehul, Pyonteck, Stephanie M., Popovitchenko, Tatiana, Matlack, Tarmie L., Prashar, Aparna, Kane, Nanci S., Favate, John, Shah, Premal, Rongo, Christopher
Publicado 2022

riboviz 2: a flexible and robust ribosome profiling data analysis and visualization workflow

por Cope, Alexander L, Anderson, Felicity, Favate, John, Jackson, Michael, Mok, Amanda, Kurowska, Anna, Liu, Junchen, MacKenzie, Emma, Shivakumar, Vikram, Tilton, Peter, Winterbourne, Sophie M, Xue, Siyin, Kavoussanakis, Kostas, Lareau, Liana F, Shah, Premal, Wallace, Edward W J
Publicado 2022

Celf4 controls mRNA translation underlying synaptic development in the prenatal mammalian neocortex

por Salamon, Iva, Park, Yongkyu, Miškić, Terezija, Kopić, Janja, Matteson, Paul, Page, Nicholas F., Roque, Alfonso, McAuliffe, Geoffrey W., Favate, John, Garcia-Forn, Marta, Shah, Premal, Judaš, Miloš, Millonig, James H., Kostović, Ivica, De Rubeis, Silvia, Hart, Ronald P., Krsnik, Željka, Rasin, Mladen-Roko
Publicado 2023