EdgeScaping: Mapping the spatial distribution of pairwise gene expression intensities

por Husain, Benafsh, Feltus, F. Alex
Publicado 2019

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes

por Haiminen, Niina, Feltus, F Alex, Parida, Laxmi
Publicado 2011

Linking Binary Gene Relationships to Drivers of Renal Cell Carcinoma Reveals Convergent Function in Alternate Tumor Progression Paths

por Poehlman, William L., Hsieh, James J., Feltus, F. Alex
Publicado 2019

Simulating the restoration of normal gene expression from different thyroid cancer stages using deep learning

por Nelligan, Nicole M., Bender, M. Reed, Feltus, F. Alex
Publicado 2022

Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study

por Feltus, F Alex, Ficklin, Stephen P, Gibson, Scott M, Smith, Melissa C
Publicado 2013

Conserved Non-Coding Regulatory Signatures in Arabidopsis Co-Expressed Gene Modules

por Spangler, Jacob B., Ficklin, Stephen P., Luo, Feng, Freeling, Michael, Feltus, F. Alex
Publicado 2012

Large-Scale Gene Relocations following an Ancient Genome Triplication Associated with the Diversification of Core Eudicots

por Wang, Yupeng, Ficklin, Stephen P., Wang, Xiyin, Feltus, F. Alex, Paterson, Andrew H.
Publicado 2016

Moving Just Enough Deep Sequencing Data to Get the Job Done

por Mills, Nicholas, Bensman, Ethan M, Poehlman, William L, Ligon, Walter B, Feltus, F Alex
Publicado 2019

Uncovering biomarker genes with enriched classification potential from Hallmark gene sets

por Targonski, Colin A., Shearer, Courtney A., Shealy, Benjamin T., Smith, Melissa C., Feltus, F. Alex
Publicado 2019

NetExtractor: Extracting a Cerebellar Tissue Gene Regulatory Network Using Differentially Expressed High Mutual Information Binary RNA Profiles

por Husain, Benafsh, Hickman, Allison R., Hang, Yuqing, Shealy, Benjamin T., Sapra, Karan, Feltus, F. Alex
Publicado 2020

Exploration into biomarker potential of region-specific brain gene co-expression networks

por Hang, Yuqing, Aburidi, Mohammed, Husain, Benafsh, Hickman, Allison R., Poehlman, William L., Feltus, F. Alex
Publicado 2020

Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms

por Wang, Yupeng, Wang, Xiyin, Tang, Haibao, Tan, Xu, Ficklin, Stephen P., Feltus, F. Alex, Paterson, Andrew H.
Publicado 2011

Discovering Condition-Specific Gene Co-Expression Patterns Using Gaussian Mixture Models: A Cancer Case Study

por Ficklin, Stephen P., Dunwoodie, Leland J., Poehlman, William L., Watson, Christopher, Roche, Kimberly E., Feltus, F. Alex
Publicado 2017

Cellular State Transformations Using Deep Learning for Precision Medicine Applications

por Targonski, Colin, Bender, M. Reed, Shealy, Benjamin T., Husain, Benafsh, Paseman, Bill, Smith, Melissa C., Feltus, F. Alex
Publicado 2020

Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format

por Mutsuddy, Arnab, Erdem, Cemal, Huggins, Jonah R, Salim, Misha, Cook, Daniel, Hobbs, Nicole, Feltus, F Alex, Birtwistle, Marc R
Publicado 2023

Named Data Networking for Genomics Data Management and Integrated Workflows

por Ogle, Cameron, Reddick, David, McKnight, Coleman, Biggs, Tyler, Pauly, Rini, Ficklin, Stephen P., Feltus, F. Alex, Shannigrahi, Susmit
Publicado 2021

Cancer cell redirection biomarker discovery using a mutual information approach

por Roche, Kimberly, Feltus, F. Alex, Park, Jang Pyo, Coissieux, Marie-May, Chang, Chenyan, Chan, Vera B. S., Bentires-Alj, Mohamed, Booth, Brian W.
Publicado 2017

Addressing noise in co-expression network construction

por Burns, Joshua J R, Shealy, Benjamin T, Greer, Mitchell S, Hadish, John A, McGowan, Matthew T, Biggs, Tyler, Smith, Melissa C, Feltus, F Alex, Ficklin, Stephen P
Publicado 2021

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure

por Hadish, John A., Biggs, Tyler D., Shealy, Benjamin T., Bender, M. Reed, McKnight, Coleman B., Wytko, Connor, Smith, Melissa C., Feltus, F. Alex, Honaas, Loren, Ficklin, Stephen P.
Publicado 2022

Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases

por Spoor, Shawna, Wytko, Connor, Soto, Brian, Chen, Ming, Almsaeed, Abdullah, Condon, Bradford, Herndon, Nic, Hough, Heidi, Jung, Sook, Staton, Meg, Wegrzyn, Jill, Main, Dorrie, Feltus, F Alex, Ficklin, Stephen P
Publicado 2020