Comparable Number of Genes Having Experienced Positive Selection among Great Ape Species

por Xie, Duo, Chen, Guangji, Meng, Xiaoyu, Wang, Haotian, Bi, Xupeng, Fang, Miaoquan, Yang, Chentao, Zhou, Yang, Long, Erping, Feng, Shaohong
Publicado 2021

Draft genome assemblies of four manakins

por Li, Xuemei, Gao, Rongsheng, Chen, Guangji, Price, Alivia Lee, Øksnebjerg, Daniel Bilyeli, Hosner, Peter Andrew, Zhou, Yang, Zhang, Guojie, Feng, Shaohong
Publicado 2022

Lineage-specific accelerated sequences underlying primate evolution

por Bi, Xupeng, Zhou, Long, Zhang, Jin-Jin, Feng, Shaohong, Hu, Mei, Cooper, David N., Lin, Jiangwei, Li, Jiali, Wu, Dong-Dong, Zhang, Guojie
Publicado 2023

A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes

por Liu, Jing, Wang, Zongji, Li, Jing, Xu, Luohao, Liu, Jiaqi, Feng, Shaohong, Guo, Chunxue, Chen, Shengchan, Ren, Zhanjun, Rao, Jinpeng, Wei, Kai, Chen, Yuezhou, Jarvis, Erich D., Zhang, Guojie, Zhou, Qi
Publicado 2021

A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals

por Li, Jing, Zhang, Jilin, Liu, Jing, Zhou, Yang, Cai, Cheng, Xu, Luohao, Dai, Xuelei, Feng, Shaohong, Guo, Chunxue, Rao, Jinpeng, Wei, Kai, Jarvis, Erich D, Jiang, Yu, Zhou, Zhengkui, Zhang, Guojie, Zhou, Qi
Publicado 2021

Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds

por Ji, Yanzhu, Feng, Shaohong, Wu, Lei, Fang, Qi, Brüniche-Olsen, Anna, DeWoody, J. Andrew, Cheng, Yalin, Zhang, Dezhi, Hao, Yan, Song, Gang, Qu, Yanhua, Suh, Alexander, Zhang, Guojie, Hackett, Shannon J., Lei, Fumin
Publicado 2022

The Genomic Footprints of the Fall and Recovery of the Crested Ibis

por Feng, Shaohong, Fang, Qi, Barnett, Ross, Li, Cai, Han, Sojung, Kuhlwilm, Martin, Zhou, Long, Pan, Hailin, Deng, Yuan, Chen, Guangji, Gamauf, Anita, Woog, Friederike, Prys-Jones, Robert, Marques-Bonet, Tomas, Gilbert, M. Thomas P., Zhang, Guojie
Publicado 2019

Changes in the functional diversity of modern bird species over the last million years

por Germain, Ryan R., Feng, Shaohong, Buffan, Lucas, Carmona, Carlos P., Chen, Guangii, Graves, Gary R., Tobias, Joseph A., Rahbek, Carsten, Lei, Fumin, Fjeldså, Jon, Hosner, Peter A., Gilbert, M. Thomas P., Zhang, Guojie, Nogués-Bravo, David
Publicado 2023

Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly

por Rando, Halie M., Farré, Marta, Robson, Michael P., Won, Naomi B., Johnson, Jennifer L., Buch, Ronak, Bastounes, Estelle R., Xiang, Xueyan, Feng, Shaohong, Liu, Shiping, Xiong, Zijun, Kim, Jaebum, Zhang, Guojie, Trut, Lyudmila N., Larkin, Denis M., Kukekova, Anna V.
Publicado 2018

Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication

por Dong, Yang, Zhang, Xiaolei, Xie, Min, Arefnezhad, Babak, Wang, Zongji, Wang, Wenliang, Feng, Shaohong, Huang, Guodong, Guan, Rui, Shen, Wenjing, Bunch, Rowan, McCulloch, Russell, Li, Qiye, Li, Bo, Zhang, Guojie, Xu, Xun, Kijas, James W., Salekdeh, Ghasem Hosseini, Wang, Wen, Jiang, Yu
Publicado 2015

Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos

por Sinding, Mikkel-Holger S., Ciucani, Marta M., Ramos-Madrigal, Jazmín, Carmagnini, Alberto, Rasmussen, Jacob Agerbo, Feng, Shaohong, Chen, Guangji, Vieira, Filipe G., Mattiangeli, Valeria, Ganjoo, Rajinder K., Larson, Greger, Sicheritz-Pontén, Thomas, Petersen, Bent, Frantz, Laurent, Gilbert, M. Thomas P., Bradley, Daniel G.
Publicado 2021

Progressive Cactus is a multiple-genome aligner for the thousand-genome era

por Armstrong, Joel, Hickey, Glenn, Diekhans, Mark, Fiddes, Ian T., Novak, Adam M., Deran, Alden, Fang, Qi, Xie, Duo, Feng, Shaohong, Stiller, Josefin, Genereux, Diane, Johnson, Jeremy, Marinescu, Voichita Dana, Alföldi, Jessica, Harris, Robert S., Lindblad-Toh, Kerstin, Haussler, David, Karlsson, Elinor, Jarvis, Erich D., Zhang, Guojie, Paten, Benedict
Publicado 2020

Response of an Afro-Palearctic bird migrant to glaciation cycles

por Thorup, Kasper, Pedersen, Lykke, da Fonseca, Rute R., Naimi, Babak, Nogués-Bravo, David, Krapp, Mario, Manica, Andrea, Willemoes, Mikkel, Sjöberg, Sissel, Feng, Shaohong, Chen, Guangji, Rey-Iglesia, Alba, Campos, Paula F., Beyer, Robert, Araújo, Miguel B., Hansen, Anders J., Zhang, Guojie, Tøttrup, Anders P., Rahbek, Carsten
Publicado 2021

Genomic insights into the secondary aquatic transition of penguins

por Cole, Theresa L., Zhou, Chengran, Fang, Miaoquan, Pan, Hailin, Ksepka, Daniel T., Fiddaman, Steven R., Emerling, Christopher A., Thomas, Daniel B., Bi, Xupeng, Fang, Qi, Ellegaard, Martin R., Feng, Shaohong, Smith, Adrian L., Heath, Tracy A., Tennyson, Alan J. D., Borboroglu, Pablo García, Wood, Jamie R., Hadden, Peter W., Grosser, Stefanie, Bost, Charles-André, Cherel, Yves, Mattern, Thomas, Hart, Tom, Sinding, Mikkel-Holger S., Shepherd, Lara D., Phillips, Richard A., Quillfeldt, Petra, Masello, Juan F., Bouzat, Juan L., Ryan, Peter G., Thompson, David R., Ellenberg, Ursula, Dann, Peter, Miller, Gary, Dee Boersma, P., Zhao, Ruoping, Gilbert, M. Thomas P., Yang, Huanming, Zhang, De-Xing, Zhang, Guojie
Publicado 2022

Dense sampling of bird diversity increases power of comparative genomics

por Feng, Shaohong, Stiller, Josefin, Deng, Yuan, Armstrong, Joel, Fang, Qi, Reeve, Andrew Hart, Xie, Duo, Chen, Guangji, Guo, Chunxue, Faircloth, Brant C., Petersen, Bent, Wang, Zongji, Zhou, Qi, Diekhans, Mark, Chen, Wanjun, Andreu-Sánchez, Sergio, Margaryan, Ashot, Howard, Jason Travis, Parent, Carole, Pacheco, George, Sinding, Mikkel-Holger S., Puetz, Lara, Cavill, Emily, Ribeiro, Ângela M., Eckhart, Leopold, Fjeldså, Jon, Hosner, Peter A., Brumfield, Robb T., Christidis, Les, Bertelsen, Mads F., Sicheritz-Ponten, Thomas, Tietze, Dieter Thomas, Robertson, Bruce C., Song, Gang, Borgia, Gerald, Claramunt, Santiago, Lovette, Irby J., Cowen, Saul J., Njoroge, Peter, Dumbacher, John Philip, Ryder, Oliver A., Fuchs, Jérôme, Bunce, Michael, Burt, David W., Cracraft, Joel, Meng, Guanliang, Hackett, Shannon J., Ryan, Peter G., Jønsson, Knud Andreas, Jamieson, Ian G., da Fonseca, Rute R., Braun, Edward L., Houde, Peter, Mirarab, Siavash, Suh, Alexander, Hansson, Bengt, Ponnikas, Suvi, Sigeman, Hanna, Stervander, Martin, Frandsen, Paul B., van der Zwan, Henriette, van der Sluis, Rencia, Visser, Carina, Balakrishnan, Christopher N., Clark, Andrew G., Fitzpatrick, John W., Bowman, Reed, Chen, Nancy, Cloutier, Alison, Sackton, Timothy B., Edwards, Scott V., Foote, Dustin J., Shakya, Subir B., Sheldon, Frederick H., Vignal, Alain, Soares, André E. R., Shapiro, Beth, González-Solís, Jacob, Ferrer-Obiol, Joan, Rozas, Julio, Riutort, Marta, Tigano, Anna, Friesen, Vicki, Dalén, Love, Urrutia, Araxi O., Székely, Tamás, Liu, Yang, Campana, Michael G., Corvelo, André, Fleischer, Robert C., Rutherford, Kim M., Gemmell, Neil J., Dussex, Nicolas, Mouritsen, Henrik, Thiele, Nadine, Delmore, Kira, Liedvogel, Miriam, Franke, Andre, Hoeppner, Marc P., Krone, Oliver, Fudickar, Adam M., Milá, Borja, Ketterson, Ellen D., Fidler, Andrew Eric, Friis, Guillermo, Parody-Merino, Ángela M., Battley, Phil F., Cox, Murray P., Lima, Nicholas Costa Barroso, Prosdocimi, Francisco, Parchman, Thomas Lee, Schlinger, Barney A., Loiselle, Bette A., Blake, John G., Lim, Haw Chuan, Day, Lainy B., Fuxjager, Matthew J., Baldwin, Maude W., Braun, Michael J., Wirthlin, Morgan, Dikow, Rebecca B., Ryder, T. Brandt, Camenisch, Glauco, Keller, Lukas F., DaCosta, Jeffrey M., Hauber, Mark E., Louder, Matthew I. M., Witt, Christopher C., McGuire, Jimmy A., Mudge, Joann, Megna, Libby C., Carling, Matthew D., Wang, Biao, Taylor, Scott A., Del-Rio, Glaucia, Aleixo, Alexandre, Vasconcelos, Ana Tereza Ribeiro, Mello, Claudio V., Weir, Jason T., Haussler, David, Li, Qiye, Yang, Huanming, Wang, Jian, Lei, Fumin, Rahbek, Carsten, Gilbert, M. Thomas P., Graves, Gary R., Jarvis, Erich D., Paten, Benedict, Zhang, Guojie
Publicado 2020

Author Correction: Dense sampling of bird diversity increases power of comparative genomics

por Feng, Shaohong, Stiller, Josefin, Deng, Yuan, Armstrong, Joel, Fang, Qi, Reeve, Andrew Hart, Xie, Duo, Chen, Guangji, Guo, Chunxue, Faircloth, Brant C., Petersen, Bent, Wang, Zongji, Zhou, Qi, Diekhans, Mark, Chen, Wanjun, Andreu-Sánchez, Sergio, Margaryan, Ashot, Howard, Jason Travis, Parent, Carole, Pacheco, George, Sinding, Mikkel-Holger S., Puetz, Lara, Cavill, Emily, Ribeiro, Ângela M., Eckhart, Leopold, Fjeldså, Jon, Hosner, Peter A., Brumfield, Robb T., Christidis, Les, Bertelsen, Mads F., Sicheritz-Ponten, Thomas, Tietze, Dieter Thomas, Robertson, Bruce C., Song, Gang, Borgia, Gerald, Claramunt, Santiago, Lovette, Irby J., Cowen, Saul J., Njoroge, Peter, Dumbacher, John Philip, Ryder, Oliver A., Fuchs, Jérôme, Bunce, Michael, Burt, David W., Cracraft, Joel, Meng, Guanliang, Hackett, Shannon J., Ryan, Peter G., Jønsson, Knud Andreas, Jamieson, Ian G., da Fonseca, Rute R., Braun, Edward L., Houde, Peter, Mirarab, Siavash, Suh, Alexander, Hansson, Bengt, Ponnikas, Suvi, Sigeman, Hanna, Stervander, Martin, Frandsen, Paul B., van der Zwan, Henriette, van der Sluis, Rencia, Visser, Carina, Balakrishnan, Christopher N., Clark, Andrew G., Fitzpatrick, John W., Bowman, Reed, Chen, Nancy, Cloutier, Alison, Sackton, Timothy B., Edwards, Scott V., Foote, Dustin J., Shakya, Subir B., Sheldon, Frederick H., Vignal, Alain, Soares, André E. R., Shapiro, Beth, González-Solís, Jacob, Ferrer-Obiol, Joan, Rozas, Julio, Riutort, Marta, Tigano, Anna, Friesen, Vicki, Dalén, Love, Urrutia, Araxi O., Székely, Tamás, Liu, Yang, Campana, Michael G., Corvelo, André, Fleischer, Robert C., Rutherford, Kim M., Gemmell, Neil J., Dussex, Nicolas, Mouritsen, Henrik, Thiele, Nadine, Delmore, Kira, Liedvogel, Miriam, Franke, Andre, Hoeppner, Marc P., Krone, Oliver, Fudickar, Adam M., Milá, Borja, Ketterson, Ellen D., Fidler, Andrew Eric, Friis, Guillermo, Parody-Merino, Ángela M., Battley, Phil F., Cox, Murray P., Lima, Nicholas Costa Barroso, Prosdocimi, Francisco, Parchman, Thomas Lee, Schlinger, Barney A., Loiselle, Bette A., Blake, John G., Lim, Haw Chuan, Day, Lainy B., Fuxjager, Matthew J., Baldwin, Maude W., Braun, Michael J., Wirthlin, Morgan, Dikow, Rebecca B., Ryder, T. Brandt, Camenisch, Glauco, Keller, Lukas F., DaCosta, Jeffrey M., Hauber, Mark E., Louder, Matthew I. M., Witt, Christopher C., McGuire, Jimmy A., Mudge, Joann, Megna, Libby C., Carling, Matthew D., Wang, Biao, Taylor, Scott A., Del-Rio, Glaucia, Aleixo, Alexandre, Vasconcelos, Ana Tereza Ribeiro, Mello, Claudio V., Weir, Jason T., Haussler, David, Li, Qiye, Yang, Huanming, Wang, Jian, Lei, Fumin, Rahbek, Carsten, Gilbert, M. Thomas P., Graves, Gary R., Jarvis, Erich D., Paten, Benedict, Zhang, Guojie
Publicado 2021