SAW: A Method to Identify Splicing Events from RNA-Seq Data Based on Splicing Fingerprints

por Ning, Kang, Fermin, Damian
Publicado 2010

iOmicsPASS: network-based integration of multiomics data for predictive subnetwork discovery

por Koh, Hiromi W. L., Fermin, Damian, Vogel, Christine, Choi, Kwok Pui, Ewing, Rob M., Choi, Hyungwon
Publicado 2019

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics

por Fermin, Damian, Allen, Baxter B, Blackwell, Thomas W, Menon, Rajasree, Adamski, Marcin, Xu, Yin, Ulintz, Peter, Omenn, Gilbert S, States, David J
Publicado 2006

SAINT: Probabilistic Scoring of Affinity Purification - Mass Spectrometry Data

por Choi, Hyungwon, Larsen, Brett, Lin, Zhen-Yuan, Breitkreutz, Ashton, Mellacheruvu, Dattatreya, Fermin, Damian, Qin, Zhaohui S., Tyers, Mike, Gingras, Anne-Claude, Nesvizhskii, Alexey I.
Publicado 2010

A comparative global phosphoproteomics analysis of obinutuzumab (GA101) versus rituximab (RTX) against RTX sensitive and resistant Burkitt lymphoma (BL) demonstrates differential p...

por Awasthi, Aradhana, Rolland, Delphine C.M., Ayello, Janet, van de Ven, Carmella, Basrur, Venkatesha, Conlon, Kevin, Fermin, Damian, Barth, Matthew J, Klein, Christian, Elenitoba-Johnson, Kojo S.J., Lim, Megan S., Cairo, Mitchell S.
Publicado 2017

Metabolites of Purine Nucleoside Phosphorylase (NP) in Serum Have the Potential to Delineate Pancreatic Adenocarcinoma

por Vareed, Shaiju K., Bhat, Vadiraja B., Thompson, Christopher, Vasu, Vihas T., Fermin, Damian, Choi, Hyungwon, Creighton, Chad J., Gayatri, Sitaram, Lan, Ling, Putluri, Nagireddy, Thangjam, Gagan Singh, Kaur, Punit, Shabahang, Mohsen, Giri, Judith G., Nesvizhskii, Alexey I., Asea, Alexander A. A., Cashikar, Anil G., Rao, Arundhati, McLoughlin, James, Sreekumar, Arun
Publicado 2011

Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis

por Graham, Sarah E., Nielsen, Jonas B., Zawistowski, Matthew, Zhou, Wei, Fritsche, Lars G., Gabrielsen, Maiken E., Skogholt, Anne Heidi, Surakka, Ida, Hornsby, Whitney E., Fermin, Damian, Larach, Daniel B., Kheterpal, Sachin, Brummett, Chad M., Lee, Seunggeun, Kang, Hyun Min, Abecasis, Goncalo R., Romundstad, Solfrid, Hallan, Stein, Sampson, Matthew G., Hveem, Kristian, Willer, Cristen J.
Publicado 2019

Single-cell transcriptomics reveals a mechanosensitive injury signaling pathway in early diabetic nephropathy

por Liu, Shuya, Zhao, Yu, Lu, Shun, Zhang, Tianran, Lindenmeyer, Maja T., Nair, Viji, Gies, Sydney E., Wu, Guochao, Nelson, Robert G., Czogalla, Jan, Aypek, Hande, Zielinski, Stephanie, Liao, Zhouning, Schaper, Melanie, Fermin, Damian, Cohen, Clemens D., Delic, Denis, Krebs, Christian F., Grahammer, Florian, Wiech, Thorsten, Kretzler, Matthias, Meyer-Schwesinger, Catherine, Bonn, Stefan, Huber, Tobias B.
Publicado 2023

MLL-AF4 cooperates with PAF1 and FACT to drive high-density enhancer interactions in leukemia

por Crump, Nicholas T., Smith, Alastair L., Godfrey, Laura, Dopico-Fernandez, Ana M., Denny, Nicholas, Harman, Joe R., Hamley, Joseph C., Jackson, Nicole E., Chahrour, Catherine, Riva, Simone, Rice, Siobhan, Kim, Jaehoon, Basrur, Venkatesha, Fermin, Damian, Elenitoba-Johnson, Kojo, Roeder, Robert G., Allis, C. David, Roberts, Irene, Roy, Anindita, Geng, Huimin, Davies, James O. J., Milne, Thomas A.
Publicado 2023

SGLT2 inhibitors mitigate kidney tubular metabolic and mTORC1 perturbations in youth-onset type 2 diabetes

por Schaub, Jennifer A., AlAkwaa, Fadhl M., McCown, Phillip J., Naik, Abhijit S., Nair, Viji, Eddy, Sean, Menon, Rajasree, Otto, Edgar A., Demeke, Dawit, Hartman, John, Fermin, Damian, O’Connor, Christopher L., Subramanian, Lalita, Bitzer, Markus, Harned, Roger, Ladd, Patricia, Pyle, Laura, Pennathur, Subramaniam, Inoki, Ken, Hodgin, Jeffrey B., Brosius, Frank C., Nelson, Robert G., Kretzler, Matthias, Bjornstad, Petter
Publicado 2023

Multi-Scalar Data Integration Links Glomerular Angiopoietin-Tie Signaling Pathway Activation With Progression of Diabetic Kidney Disease

por Liu, Jiahao, Nair, Viji, Zhao, Yi-yang, Chang, Dong-yuan, Limonte, Christine, Bansal, Nisha, Fermin, Damian, Eichinger, Felix, Tanner, Emily C., Bellovich, Keith A., Steigerwalt, Susan, Bhat, Zeenat, Hawkins, Jennifer J., Subramanian, Lalita, Rosas, Sylvia E., Sedor, John R., Vasquez, Miguel A., Waikar, Sushrut S., Bitzer, Markus, Pennathur, Subramaniam, Brosius, Frank C., De Boer, Ian, Chen, Min, Kretzler, Matthias, Ju, Wenjun
Publicado 2022

Epigenome-wide meta-analysis identifies DNA methylation biomarkers associated with diabetic kidney disease

por Smyth, Laura J., Dahlström, Emma H., Syreeni, Anna, Kerr, Katie, Kilner, Jill, Doyle, Ross, Brennan, Eoin, Nair, Viji, Fermin, Damian, Nelson, Robert G., Looker, Helen C., Wooster, Christopher, Andrews, Darrell, Anderson, Kerry, McKay, Gareth J., Cole, Joanne B., Salem, Rany M., Conlon, Peter J., Kretzler, Matthias, Hirschhorn, Joel N., Sadlier, Denise, Godson, Catherine, Florez, Jose C., Forsblom, Carol, Maxwell, Alexander P., Groop, Per-Henrik, Sandholm, Niina, McKnight, Amy Jayne
Publicado 2022

SARS-CoV-2 receptor networks in diabetic and COVID-19–associated kidney disease

por Menon, Rajasree, Otto, Edgar A., Sealfon, Rachel, Nair, Viji, Wong, Aaron K., Theesfeld, Chandra L., Chen, Xi, Wang, Yuan, Boppana, Avinash S., Luo, Jinghui, Yang, Yingbao, Kasson, Peter M., Schaub, Jennifer A., Berthier, Celine C., Eddy, Sean, Lienczewski, Chrysta C., Godfrey, Bradley, Dagenais, Susan L., Sohaney, Ryann, Hartman, John, Fermin, Damian, Subramanian, Lalita, Looker, Helen C., Harder, Jennifer L., Mariani, Laura H., Hodgin, Jeffrey B., Sexton, Jonathan Z., Wobus, Christiane E., Naik, Abhijit S., Nelson, Robert G., Troyanskaya, Olga G., Kretzler, Matthias
Publicado 2020

Genome-wide meta-analysis and omics integration identifies novel genes associated with diabetic kidney disease

por Sandholm, Niina, Cole, Joanne B., Nair, Viji, Sheng, Xin, Liu, Hongbo, Ahlqvist, Emma, van Zuydam, Natalie, Dahlström, Emma H., Fermin, Damian, Smyth, Laura J., Salem, Rany M., Forsblom, Carol, Valo, Erkka, Harjutsalo, Valma, Brennan, Eoin P., McKay, Gareth J., Andrews, Darrell, Doyle, Ross, Looker, Helen C., Nelson, Robert G., Palmer, Colin, McKnight, Amy Jayne, Godson, Catherine, Maxwell, Alexander P., Groop, Leif, McCarthy, Mark I., Kretzler, Matthias, Susztak, Katalin, Hirschhorn, Joel N., Florez, Jose C., Groop, Per-Henrik
Publicado 2022

Comparing Kidney Health Outcomes in Children, Adolescents, and Adults With Focal Segmental Glomerulosclerosis

por Gipson, Debbie S., Troost, Jonathan P., Spino, Cathie, Attalla, Samara, Tarnoff, Joshua, Massengill, Susan, Lafayette, Richard, Vega-Warner, Virginia, Adler, Sharon, Gipson, Patrick, Elliott, Matthew, Kaskel, Frederick, Fermin, Damian, Moxey-Mims, Marva, Fine, Richard N., Brown, Elizabeth J., Reidy, Kimberly, Tuttle, Katherine, Gibson, Keisha, Lemley, Kevin V., Greenbaum, Larry A., Atkinson, Meredith A., Hingorani, Sangeeta, Srivastava, Tarak, Sethna, Christine B., Meyers, Kevin, Tran, Cheryl, Dell, Katherine M., Wang, Chia-shi, Yee, Jennifer Lai, Sampson, Matthew G., Gbadegesin, Rasheed, Lin, J. J., Brady, Tammy, Rheault, Michelle, Trachtman, Howard
Publicado 2022

An integrated organoid omics map extends modeling potential of kidney disease

por Lassé, Moritz, El Saghir, Jamal, Berthier, Celine C., Eddy, Sean, Fischer, Matthew, Laufer, Sandra D., Kylies, Dominik, Hutzfeldt, Arvid, Bonin, Léna Lydie, Dumoulin, Bernhard, Menon, Rajasree, Vega-Warner, Virginia, Eichinger, Felix, Alakwaa, Fadhl, Fermin, Damian, Billing, Anja M., Minakawa, Akihiro, McCown, Phillip J., Rose, Michael P., Godfrey, Bradley, Meister, Elisabeth, Wiech, Thorsten, Noriega, Mercedes, Chrysopoulou, Maria, Brandts, Paul, Ju, Wenjun, Reinhard, Linda, Hoxha, Elion, Grahammer, Florian, Lindenmeyer, Maja T., Huber, Tobias B., Schlüter, Hartmut, Thiel, Steffen, Mariani, Laura H., Puelles, Victor G., Braun, Fabian, Kretzler, Matthias, Demir, Fatih, Harder, Jennifer L., Rinschen, Markus M.
Publicado 2023

The CRAPome: a Contaminant Repository for Affinity Purification Mass Spectrometry Data

por Mellacheruvu, Dattatreya, Wright, Zachary, Couzens, Amber L., Lambert, Jean-Philippe, St-Denis, Nicole, Li, Tuo, Miteva, Yana V., Hauri, Simon, Sardiu, Mihaela E., Low, Teck Yew, Halim, Vincentius A., Bagshaw, Richard D., Hubner, Nina C., al-Hakim, Abdallah, Bouchard, Annie, Faubert, Denis, Fermin, Damian, Dunham, Wade H., Goudreault, Marilyn, Lin, Zhen-Yuan, Badillo, Beatriz Gonzalez, Pawson, Tony, Durocher, Daniel, Coulombe, Benoit, Aebersold, Ruedi, Superti-Furga, Giulio, Colinge, Jacques, Heck, Albert J. R., Choi, Hyungwon, Gstaiger, Matthias, Mohammed, Shabaz, Cristea, Ileana M., Bennett, Keiryn L., Washburn, Mike P., Raught, Brian, Ewing, Rob M., Gingras, Anne-Claude, Nesvizhskii, Alexey I.
Publicado 2013