Differential cytokine contributions of perivascular haematopoietic stem cell niches

por Asada, Noboru, Kunisaki, Yuya, Pierce, Halley, Wang, Zichen, Fernandez, Nicolas F., Birbrair, Alexander, Ma’ayan, Avi, Frenette, Paul S.
Publicado 2017

Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data

por Fernandez, Nicolas F., Gundersen, Gregory W., Rahman, Adeeb, Grimes, Mark L., Rikova, Klarisa, Hornbeck, Peter, Ma’ayan, Avi
Publicado 2017

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins

por Rouillard, Andrew D., Gundersen, Gregory W., Fernandez, Nicolas F., Wang, Zichen, Monteiro, Caroline D., McDermott, Michael G., Ma’ayan, Avi
Publicado 2016

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures

por Duan, Qiaonan, Flynn, Corey, Niepel, Mario, Hafner, Marc, Muhlich, Jeremy L., Fernandez, Nicolas F., Rouillard, Andrew D., Tan, Christopher M., Chen, Edward Y., Golub, Todd R., Sorger, Peter K., Subramanian, Aravind, Ma'ayan, Avi
Publicado 2014

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

por Kuleshov, Maxim V., Jones, Matthew R., Rouillard, Andrew D., Fernandez, Nicolas F., Duan, Qiaonan, Wang, Zichen, Koplev, Simon, Jenkins, Sherry L., Jagodnik, Kathleen M., Lachmann, Alexander, McDermott, Michael G., Monteiro, Caroline D., Gundersen, Gregory W., Ma'ayan, Avi
Publicado 2016

Peripheral immune cell reactivity and neural response to reward in patients with depression and anhedonia

por Costi, Sara, Morris, Laurel S., Collins, Abigail, Fernandez, Nicolas F., Patel, Manishkumar, Xie, Hui, Kim-Schulze, Seunghee, Stern, Emily R., Collins, Katherine A., Cathomas, Flurin, Parides, Michael K., Whitton, Alexis E., Pizzagalli, Diego A., Russo, Scott J., Murrough, James W.
Publicado 2021

L1000CDS(2): LINCS L1000 characteristic direction signatures search engine

por Duan, Qiaonan, Reid, St Patrick, Clark, Neil R, Wang, Zichen, Fernandez, Nicolas F, Rouillard, Andrew D, Readhead, Ben, Tritsch, Sarah R, Hodos, Rachel, Hafner, Marc, Niepel, Mario, Sorger, Peter K, Dudley, Joel T, Bavari, Sina, Panchal, Rekha G, Ma’ayan, Avi
Publicado 2016

Length of gestation and birth weight are associated with indices of combined kidney biomarkers in early childhood

por Levin-Schwartz, Yuri, Curtin, Paul, Svensson, Katherine, Fernandez, Nicolas F., Kim-Schulze, Seunghee, Hair, Gleicy M., Flores, Daniel, Pantic, Ivan, Tamayo-Ortiz, Marcela, Luisa Pizano-Zárate, María, Gennings, Chris, Satlin, Lisa M., Baccarelli, Andrea A., Tellez-Rojo, Martha M., Wright, Robert O., Sanders, Alison P.
Publicado 2019

Systems Analysis Implicates WAVE2 Complex in the Pathogenesis of Developmental Left-Sided Obstructive Heart Defects

por Edwards, Jonathan J., Rouillard, Andrew D., Fernandez, Nicolas F., Wang, Zichen, Lachmann, Alexander, Shankaran, Sunita S., Bisgrove, Brent W., Demarest, Bradley, Turan, Nahid, Srivastava, Deepak, Bernstein, Daniel, Deanfield, John, Giardini, Alessandro, Porter, George, Kim, Richard, Roberts, Amy E., Newburger, Jane W., Goldmuntz, Elizabeth, Brueckner, Martina, Lifton, Richard P., Seidman, Christine E., Chung, Wendy K., Tristani-Firouzi, Martin, Yost, H. Joseph, Ma’ayan, Avi, Gelb, Bruce D.
Publicado 2020

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

por Wang, Zichen, Monteiro, Caroline D., Jagodnik, Kathleen M., Fernandez, Nicolas F., Gundersen, Gregory W., Rouillard, Andrew D., Jenkins, Sherry L., Feldmann, Axel S., Hu, Kevin S., McDermott, Michael G., Duan, Qiaonan, Clark, Neil R., Jones, Matthew R., Kou, Yan, Goff, Troy, Woodland, Holly, Amaral, Fabio M R., Szeto, Gregory L., Fuchs, Oliver, Schüssler-Fiorenza Rose, Sophia M., Sharma, Shvetank, Schwartz, Uwe, Bausela, Xabier Bengoetxea, Szymkiewicz, Maciej, Maroulis, Vasileios, Salykin, Anton, Barra, Carolina M., Kruth, Candice D., Bongio, Nicholas J., Mathur, Vaibhav, Todoric, Radmila D, Rubin, Udi E., Malatras, Apostolos, Fulp, Carl T., Galindo, John A., Motiejunaite, Ruta, Jüschke, Christoph, Dishuck, Philip C., Lahl, Katharina, Jafari, Mohieddin, Aibar, Sara, Zaravinos, Apostolos, Steenhuizen, Linda H., Allison, Lindsey R., Gamallo, Pablo, de Andres Segura, Fernando, Dae Devlin, Tyler, Pérez-García, Vicente, Ma'ayan, Avi
Publicado 2016