Fast and accurate average genome size and 16S rRNA gene average copy number computation in metagenomic data

por Pereira-Flores, Emiliano, Glöckner, Frank Oliver, Fernandez-Guerra, Antonio
Publicado 2019

T-RFPred: a nucleotide sequence size prediction tool for microbial community description based on terminal-restriction fragment length polymorphism chromatograms

por Fernàndez-Guerra, Antonio, Buchan, Alison, Mou, Xiaozhen, Casamayor, Emilio O, González, José M
Publicado 2010

Secondary metabolite biosynthetic diversity in Arctic Ocean metagenomes

por Rego, Adriana, Fernandez-Guerra, Antonio, Duarte, Pedro, Assmy, Philipp, Leão, Pedro N., Magalhães, Catarina
Publicado 2021

Renewal of planktonic foraminifera diversity after the Cretaceous Paleogene mass extinction by benthic colonizers

por Morard, Raphaël, Hassenrück, Christiane, Greco, Mattia, Fernandez-Guerra, Antonio, Rigaud, Sylvain, Douady, Christophe J., Kucera, Michal
Publicado 2022

Meta-SourceTracker: application of Bayesian source tracking to shotgun metagenomics

por McGhee, Jordan J., Rawson, Nick, Bailey, Barbara A., Fernandez-Guerra, Antonio, Sisk-Hackworth, Laura, Kelley, Scott T.
Publicado 2020

Patterns and architecture of genomic islands in marine bacteria

por Fernández-Gómez, Beatriz, Fernàndez-Guerra, Antonio, Casamayor, Emilio O, González, José M, Pedrós-Alió, Carlos, Acinas, Silvia G
Publicado 2012

Recurrent patterns of microdiversity in a temperate coastal marine environment

por Chafee, Meghan, Fernàndez-Guerra, Antonio, Buttigieg, Pier Luigi, Gerdts, Gunnar, Eren, A Murat, Teeling, Hanno, Amann, Rudolf I
Publicado 2018

MyOSD 2014: Evaluating Oceanographic Measurements Contributed by Citizen Scientists in Support of Ocean Sampling Day

por Schnetzer, Julia, Kopf, Anna, Bietz, Matthew J., Buttigieg, Pier Luigi, Fernandez-Guerra, Antonio, Ristov, Aleksandar Pop, Glöckner, Frank Oliver, Kottmann, Renzo
Publicado 2016

Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics

por Bergauer, Kristin, Fernandez-Guerra, Antonio, Garcia, Juan A. L., Sprenger, Richard R., Stepanauskas, Ramunas, Pachiadaki, Maria G., Jensen, Ole N., Herndl, Gerhard J.
Publicado 2018

Mirusviruses link herpesviruses to giant viruses

por Gaïa, Morgan, Meng, Lingjie, Pelletier, Eric, Forterre, Patrick, Vanni, Chiara, Fernandez-Guerra, Antonio, Jaillon, Olivier, Wincker, Patrick, Ogata, Hiroyuki, Krupovic, Mart, Delmont, Tom O.
Publicado 2023

Genomic adaptation of giant viruses in polar oceans

por Meng, Lingjie, Delmont, Tom O., Gaïa, Morgan, Pelletier, Eric, Fernàndez-Guerra, Antonio, Chaffron, Samuel, Neches, Russell Y., Wu, Junyi, Kaneko, Hiroto, Endo, Hisashi, Ogata, Hiroyuki
Publicado 2023

Comparative Genomic Analysis Reveals a Diverse Repertoire of Genes Involved in Prokaryote-Eukaryote Interactions within the Pseudovibrio Genus

por Romano, Stefano, Fernàndez-Guerra, Antonio, Reen, F. Jerry, Glöckner, Frank O., Crowley, Susan P., O'Sullivan, Orla, Cotter, Paul D., Adams, Claire, Dobson, Alan D. W., O'Gara, Fergal
Publicado 2016

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

por Veseli, Iva, Chen, Yiqun T., Schechter, Matthew S., Vanni, Chiara, Fogarty, Emily C., Watson, Andrea R., Jabri, Bana, Blekhman, Ran, Willis, Amy D., Yu, Michael K., Fernàndez-Guerra, Antonio, Füssel, Jessika, Eren, A. Murat
Publicado 2023

Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab)

por Varsos, Constantinos, Patkos, Theodore, Oulas, Anastasis, Pavloudi, Christina, Gougousis, Alexandros, Ijaz, Umer Zeeshan, Filiopoulou, Irene, Pattakos, Nikolaos, Vanden Berghe, Edward, Fernández-Guerra, Antonio, Faulwetter, Sarah, Chatzinikolaou, Eva, Pafilis, Evangelos, Bekiari, Chryssoula, Doerr, Martin, Arvanitidis, Christos
Publicado 2016

Unifying the known and unknown microbial coding sequence space

por Vanni, Chiara, Schechter, Matthew S, Acinas, Silvia G, Barberán, Albert, Buttigieg, Pier Luigi, Casamayor, Emilio O, Delmont, Tom O, Duarte, Carlos M, Eren, A Murat, Finn, Robert D, Kottmann, Renzo, Mitchell, Alex, Sánchez, Pablo, Siren, Kimmo, Steinegger, Martin, Gloeckner, Frank Oliver, Fernàndez-Guerra, Antonio
Publicado 2022

Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

por Fellows Yates, James A., Andrades Valtueña, Aida, Vågene, Åshild J., Cribdon, Becky, Velsko, Irina M., Borry, Maxime, Bravo-Lopez, Miriam J., Fernandez-Guerra, Antonio, Green, Eleanor J., Ramachandran, Shreya L., Heintzman, Peter D., Spyrou, Maria A., Hübner, Alexander, Gancz, Abigail S., Hider, Jessica, Allshouse, Aurora F., Zaro, Valentina, Warinner, Christina
Publicado 2021

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

por Delmont, Tom O., Gaia, Morgan, Hinsinger, Damien D., Frémont, Paul, Vanni, Chiara, Fernandez-Guerra, Antonio, Eren, A. Murat, Kourlaiev, Artem, d'Agata, Leo, Clayssen, Quentin, Villar, Emilie, Labadie, Karine, Cruaud, Corinne, Poulain, Julie, Da Silva, Corinne, Wessner, Marc, Noel, Benjamin, Aury, Jean-Marc, de Vargas, Colomban, Bowler, Chris, Karsenti, Eric, Pelletier, Eric, Wincker, Patrick, Jaillon, Olivier
Publicado 2022

A computational framework to explore large-scale biosynthetic diversity

por Navarro-Muñoz, Jorge C., Selem-Mojica, Nelly, Mullowney, Michael W., Kautsar, Satria A., Tryon, James H., Parkinson, Elizabeth I., De Los Santos, Emmanuel L.C., Yeong, Marley, Cruz-Morales, Pablo, Abubucker, Sahar, Roeters, Arne, Lokhorst, Wouter, Fernandez-Guerra, Antonio, Cappelini, Luciana Teresa Dias, Goering, Anthony W., Thomson, Regan J., Metcalf, William W., Kelleher, Neil L., Barona-Gomez, Francisco, Medema, Marnix H.
Publicado 2019

Inter-comparison of marine microbiome sampling protocols

por Pascoal, Francisco, Tomasino, Maria Paola, Piredda, Roberta, Quero, Grazia Marina, Torgo, Luís, Poulain, Julie, Galand, Pierre E., Fuhrman, Jed A., Mitchell, Alex, Tinta, Tinkara, Turk Dermastia, Timotej, Fernandez-Guerra, Antonio, Vezzi, Alessandro, Logares, Ramiro, Malfatti, Francesca, Endo, Hisashi, Dąbrowska, Anna Maria, De Pascale, Fabio, Sánchez, Pablo, Henry, Nicolas, Fosso, Bruno, Wilson, Bryan, Toshchakov, Stephan, Ferrant, Gregory Kevin, Grigorov, Ivo, Vieira, Fabio Rocha Jimenez, Costa, Rodrigo, Pesant, Stéphane, Magalhães, Catarina
Publicado 2023

Decoding the ocean's microbiological secrets for marine enzyme biodiscovery

por Ferrer, Manuel, Méndez-García, Celia, Bargiela, Rafael, Chow, Jennifer, Alonso, Sandra, García-Moyano, Antonio, Bjerga, Gro E K, Steen, Ida H, Schwabe, Tatjana, Blom, Charlotte, Vester, Jan, Weckbecker, Andrea, Shahgaldian, Patrick, de Carvalho, Carla C C R, Meskys, Rolandas, Zanaroli, Giulio, Glöckner, Frank O, Fernández-Guerra, Antonio, Thambisetty, Siva, de la Calle, Fernando, Golyshina, Olga V, Yakimov, Michail M, Jaeger, Karl-Erich, Yakunin, Alexander F, Streit, Wolfgang R, McMeel, Oonagh, Calewaert, Jan-Bart, Tonné, Nathalie, Golyshin, Peter N
Publicado 2018