Investigating the Human Host—ssRNA Virus Interaction Landscape Using the SMEAGOL Toolbox

por Lal, Avantika, Galvao Ferrarini, Mariana, Gruber, Andreas J.
Publicado 2022

MicroRNA Target Identification: Revisiting Accessibility and Seed Anchoring

por Homberg, Nicolas, Galvão Ferrarini, Mariana, Gaspin, Christine, Sagot, Marie-France
Publicado 2023

Resistome analysis of bloodstream infection bacterial genomes reveals a specific set of proteins involved in antibiotic resistance and drug efflux

por Oliveira, Willian K, Ferrarini, Mariana, Morello, Luis G, Faoro, Helisson
Publicado 2020

A comprehensive evaluation of binning methods to recover human gut microbial species from a non-redundant reference gene catalog

por Borderes, Marianne, Gasc, Cyrielle, Prestat, Emmanuel, Galvão Ferrarini, Mariana, Vinga, Susana, Boucinha, Lilia, Sagot, Marie-France
Publicado 2021

BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data

por Moraga, Carol, Sanchez, Evelyn, Ferrarini, Mariana Galvão, Gutierrez, Rodrigo A, Vidal, Elena A, Sagot, Marie-France
Publicado 2022

MOOMIN – Mathematical explOration of ’Omics data on a MetabolIc Network

por Pusa, Taneli, Ferrarini, Mariana Galvão, Andrade, Ricardo, Mary, Arnaud, Marchetti-Spaccamela, Alberto, Stougie, Leen, Sagot, Marie-France
Publicado 2019

Trypanosoma cruzi XRNA granules colocalise with distinct mRNP granules at the nuclear periphery

por da Costa, Jimena Ferreira, Ferrarini, Mariana Galvão, Nardelli, Sheila Cristina, Goldenberg, Samuel, Ávila, Andréa Rodrigues, Holetz, Fabíola Barbieri
Publicado 2018

Inter-Strain Epigenomic Profiling Reveals a Candidate IAP Master Copy in C3H Mice

por Rebollo, Rita, Galvão-Ferrarini, Mariana, Gagnier, Liane, Zhang, Ying, Ferraj, Ardian, Beck, Christine R., Lorincz, Matthew C., Mager, Dixie L.
Publicado 2020

Phenotypic and Transcriptomic Responses to Stress Differ According to Population Geography in an Invasive Species

por Marin, Pierre, Jaquet, Angelo, Picarle, Justine, Fablet, Marie, Merel, Vincent, Delignette-Muller, Marie-Laure, Ferrarini, Mariana Galvão, Gibert, Patricia, Vieira, Cristina
Publicado 2021

Modulation of Klebsiella pneumoniae Outer Membrane Vesicle Protein Cargo under Antibiotic Treatment

por Lucena, Aline Castro Rodrigues, Ferrarini, Mariana Galvão, de Oliveira, Willian Klassen, Marcon, Bruna Hilzendeger, Morello, Luis Gustavo, Alves, Lysangela Ronalte, Faoro, Helisson
Publicado 2023

Mycoplasma hyopneumoniae J elicits an antioxidant response and decreases the expression of ciliary genes in infected swine epithelial cells

por Mucha, Scheila G., Ferrarini, Mariana G., Moraga, Carol, Di Genova, Alex, Guyon, Laurent, Tardy, Florence, Rome, Sophie, Sagot, Marie-France, Zaha, Arnaldo
Publicado 2020

Totoro: Identifying Active Reactions During the Transient State for Metabolic Perturbations

por Galvão Ferrarini, Mariana, Ziska, Irene, Andrade, Ricardo, Julien-Laferrière, Alice, Duchemin, Louis, César, Roberto Marcondes, Mary, Arnaud, Vinga, Susana, Sagot, Marie-France
Publicado 2022

Endosymbiont-containing germarium transcriptional survey in a cereal weevil depicts downregulation of immune effectors at the onset of sexual maturity

por Ferrarini, Mariana Galvão, Vallier, Agnès, Dell’Aglio, Elisa, Balmand, Séverine, Vincent-Monégat, Carole, Debbache, Mériem, Maire, Justin, Parisot, Nicolas, Zaidman-Rémy, Anna, Heddi, Abdelaziz, Rebollo, Rita
Publicado 2023

Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

por Ferrarini, Mariana Galvão, Dell’Aglio, Elisa, Vallier, Agnès, Balmand, Séverine, Vincent-Monégat, Carole, Hughes, Sandrine, Gillet, Benjamin, Parisot, Nicolas, Zaidman-Rémy, Anna, Vieira, Cristina, Heddi, Abdelaziz, Rebollo, Rita
Publicado 2022

Insights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modeling

por Ferrarini, Mariana G., Siqueira, Franciele M., Mucha, Scheila G., Palama, Tony L., Jobard, Élodie, Elena-Herrmann, Bénédicte, R. Vasconcelos, Ana T., Tardy, Florence, Schrank, Irene S., Zaha, Arnaldo, Sagot, Marie-France
Publicado 2016

Intestinal GCN2 controls Drosophila systemic growth in response to Lactiplantibacillus plantarum symbiotic cues encoded by r/tRNA operons

por Grenier, Théodore, Consuegra, Jessika, Ferrarini, Mariana G, Akherraz, Houssam, Bai, Longwei, Dusabyinema, Yves, Rahioui, Isabelle, Da Silva, Pedro, Gillet, Benjamin, Hughes, Sandrine, Ramos, Cathy I, Matos, Renata C, Leulier, François
Publicado 2023

Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis

por Ferrarini, Mariana G., Lal, Avantika, Rebollo, Rita, Gruber, Andreas J., Guarracino, Andrea, Gonzalez, Itziar Martinez, Floyd, Taylor, de Oliveira, Daniel Siqueira, Shanklin, Justin, Beausoleil, Ethan, Pusa, Taneli, Pickett, Brett E., Aguiar-Pulido, Vanessa
Publicado 2021

Dichloroacetate and Pyruvate Metabolism: Pyruvate Dehydrogenase Kinases as Targets Worth Investigating for Effective Therapy of Toxoplasmosis

por Ferrarini, Mariana Galvão, Nisimura, Lindice Mitie, Girard, Richard Marcel Bruno Moreira, Alencar, Mayke Bezerra, Fragoso, Mariana Sayuri Ishikawa, Araújo-Silva, Carlla Assis, Veiga, Alan de Almeida, Abud, Ana Paula Ressetti, Nardelli, Sheila Cristina, Vommaro, Rossiane C., Silber, Ariel Mariano, France-Sagot, Marie, Ávila, Andréa Rodrigues
Publicado 2021

Chemotherapy-induced transposable elements activate MDA5 to enhance haematopoietic regeneration

por Clapes, Thomas, Polyzou, Aikaterini, Prater, Pia, Sagar, Morales-Hernández, Antonio, Ferrarini, Mariana Galvao, Kehrer, Natalie, Lefkopoulos, Stylianos, Bergo, Veronica, Hummel, Barbara, Obier, Nadine, Maticzka, Daniel, Bridgeman, Anne, Herman, Josip S., Ilik, Ibrahim, Klaeylé, Lhéanna, Rehwinkel, Jan, McKinney-Freeman, Shannon, Backofen, Rolf, Akhtar, Asifa, Cabezas-Wallscheid, Nina, Sawarkar, Ritwick, Rebollo, Rita, Grün, Dominic, Trompouki, Eirini
Publicado 2021

Publisher Correction: Chemotherapy-induced transposable elements activate MDA5 to enhance haematopoietic regeneration

por Clapes, Thomas, Polyzou, Aikaterini, Prater, Pia, Sagar, Morales-Hernández, Antonio, Ferrarini, Mariana Galvao, Kehrer, Natalie, Lefkopoulos, Stylianos, Bergo, Veronica, Hummel, Barbara, Obier, Nadine, Maticzka, Daniel, Bridgeman, Anne, Herman, Josip S., Ilik, Ibrahim, Klaeylé, Lhéanna, Rehwinkel, Jan, McKinney-Freeman, Shannon, Backofen, Rolf, Akhtar, Asifa, Cabezas-Wallscheid, Nina, Sawarkar, Ritwick, Rebollo, Rita, Grün, Dominic, Trompouki, Eirini
Publicado 2021