FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples

por Paciello, Giulia, Ficarra, Elisa
Publicado 2017

Mining textural knowledge in biological images: Applications, methods and trends

por Di Cataldo, Santa, Ficarra, Elisa
Publicado 2016

Computational Methods for CLIP-seq Data Processing

por Reyes-Herrera, Paula H, Ficarra, Elisa
Publicado 2014

One Decade of Development and Evolution of MicroRNA Target Prediction Algorithms

por Reyes∼Herrera, Paula H., Ficarra, Elisa
Publicado 2012

MiREx: mRNA levels prediction from gene sequence and miRNA target knowledge

por Pianfetti, Elena, Lovino, Marta, Ficarra, Elisa, Martignetti, Loredana
Publicado 2023

isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation

por Urgese, Gianvito, Paciello, Giulia, Acquaviva, Andrea, Ficarra, Elisa
Publicado 2016

LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences

por Winkler, Jörg, Urgese, Gianvito, Ficarra, Elisa, Reinert, Knut
Publicado 2022

FunMod: A Cytoscape Plugin for Identifying Functional Modules in Undirected Protein–Protein Networks

por Natale, Massimo, Benso, Alfredo, Di Carlo, Stefano, Ficarra, Elisa
Publicado 2014

A Novel Gaussian Extrapolation Approach for 2D Gel Electrophoresis Saturated Protein Spots

por Natale, Massimo, Caiazzo, Alfonso, Bucci, Enrico M., Ficarra, Elisa
Publicado 2012

miREE: miRNA recognition elements ensemble

por Reyes-Herrera, Paula H, Ficarra, Elisa, Acquaviva, Andrea, Macii, Enrico
Publicado 2011

A Deep Learning Approach to the Screening of Oncogenic Gene Fusions in Humans

por Lovino, Marta, Urgese, Gianvito, Macii, Enrico, Di Cataldo, Santa, Ficarra, Elisa
Publicado 2019

Exploiting Gene Expression Profiles for the Automated Prediction of Connectivity between Brain Regions

por Roberti, Ilaria, Lovino, Marta, Di Cataldo, Santa, Ficarra, Elisa, Urgese, Gianvito
Publicado 2019

BioSeqZip: a collapser of NGS redundant reads for the optimization of sequence analysis

por Urgese, Gianvito, Parisi, Emanuele, Scicolone, Orazio, Di Cataldo, Santa, Ficarra, Elisa
Publicado 2020

Exploiting generative self-supervised learning for the assessment of biological images with lack of annotations

por Mascolini, Alessio, Cardamone, Dario, Ponzio, Francesco, Di Cataldo, Santa, Ficarra, Elisa
Publicado 2022

DEEPrior: a deep learning tool for the prioritization of gene fusions

por Lovino, Marta, Ciaburri, Maria Serena, Urgese, Gianvito, Di Cataldo, Santa, Ficarra, Elisa
Publicado 2020

PhyliCS: a Python library to explore scCNA data and quantify spatial tumor heterogeneity

por Montemurro, Marilisa, Grassi, Elena, Pizzino, Carmelo Gabriele, Bertotti, Andrea, Ficarra, Elisa, Urgese, Gianvito
Publicado 2021

VDJSeq-Solver: In Silico V(D)J Recombination Detection Tool

por Paciello, Giulia, Acquaviva, Andrea, Pighi, Chiara, Ferrarini, Alberto, Macii, Enrico, Zamo’, Alberto, Ficarra, Elisa
Publicado 2015

MicroRNA–mRNA interactions underlying colorectal cancer molecular subtypes

por Cantini, Laura, Isella, Claudio, Petti, Consalvo, Picco, Gabriele, Chiola, Simone, Ficarra, Elisa, Caselle, Michele, Medico, Enzo
Publicado 2015

Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer

por Abate, Francesco, Zairis, Sakellarios, Ficarra, Elisa, Acquaviva, Andrea, Wiggins, Chris H, Frattini, Veronique, Lasorella, Anna, Iavarone, Antonio, Inghirami, Giorgio, Rabadan, Raul
Publicado 2014

FUNGI: FUsioN Gene Integration toolset

por Cervera, Alejandra, Rausio, Heidi, Kähkönen, Tiia, Andersson, Noora, Partel, Gabriele, Rantanen, Ville, Paciello, Giulia, Ficarra, Elisa, Hynninen, Johanna, Hietanen, Sakari, Carpén, Olli, Lehtonen, Rainer, Hautaniemi, Sampsa, Huhtinen, Kaisa
Publicado 2021