A Systems-Genetics Approach and Data Mining Tool to Assist in the Discovery of Genes Underlying Complex Traits in Oryza sativa

por Ficklin, Stephen P., Feltus, Frank Alex
Publicado 2013

blend4php: a PHP API for galaxy

por Wytko, Connor, Soto, Brian, Ficklin, Stephen P.
Publicado 2017

Chromosomal characteristics of salt stress heritable gene expression in the rice genome

por McGowan, Matthew T., Zhang, Zhiwu, Ficklin, Stephen P.
Publicado 2021

Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study

por Feltus, F Alex, Ficklin, Stephen P, Gibson, Scott M, Smith, Melissa C
Publicado 2013

Discovery and validation of a glioblastoma co-expressed gene module

por Dunwoodie, Leland J., Poehlman, William L., Ficklin, Stephen P., Feltus, Frank Alexander
Publicado 2018

Conserved Non-Coding Regulatory Signatures in Arabidopsis Co-Expressed Gene Modules

por Spangler, Jacob B., Ficklin, Stephen P., Luo, Feng, Freeling, Michael, Feltus, F. Alex
Publicado 2012

Large-Scale Gene Relocations following an Ancient Genome Triplication Associated with the Diversification of Core Eudicots

por Wang, Yupeng, Ficklin, Stephen P., Wang, Xiyin, Feltus, F. Alex, Paterson, Andrew H.
Publicado 2016

Identification of condition-specific regulatory mechanisms in normal and cancerous human lung tissue

por Hang, Yuqing, Burns, Josh, Shealy, Benjamin T., Pauly, Rini, Ficklin, Stephen P., Feltus, Frank A.
Publicado 2022

Massive-Scale Gene Co-Expression Network Construction and Robustness Testing Using Random Matrix Theory

por Gibson, Scott M., Ficklin, Stephen P., Isaacson, Sven, Luo, Feng, Feltus, Frank A., Smith, Melissa C.
Publicado 2013

Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms

por Wang, Yupeng, Wang, Xiyin, Tang, Haibao, Tan, Xu, Ficklin, Stephen P., Feltus, F. Alex, Paterson, Andrew H.
Publicado 2011

Discovering Condition-Specific Gene Co-Expression Patterns Using Gaussian Mixture Models: A Cancer Case Study

por Ficklin, Stephen P., Dunwoodie, Leland J., Poehlman, William L., Watson, Christopher, Roche, Kimberly E., Feltus, F. Alex
Publicado 2017

Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases

por Sanderson, Lacey-Anne, Ficklin, Stephen P., Cheng, Chun-Huai, Jung, Sook, Feltus, Frank A., Bett, Kirstin E., Main, Dorrie
Publicado 2013

Named Data Networking for Genomics Data Management and Integrated Workflows

por Ogle, Cameron, Reddick, David, McKnight, Coleman, Biggs, Tyler, Pauly, Rini, Ficklin, Stephen P., Feltus, F. Alex, Shannigrahi, Susmit
Publicado 2021

CottonGen: a genomics, genetics and breeding database for cotton research

por Yu, Jing, Jung, Sook, Cheng, Chun-Huai, Ficklin, Stephen P., Lee, Taein, Zheng, Ping, Jones, Don, Percy, Richard G., Main, Dorrie
Publicado 2014

Transcriptomics of Differential Ripening in ‘d’Anjou’ Pear (Pyrus communis L.)

por Honaas, Loren, Hargarten, Heidi, Hadish, John, Ficklin, Stephen P., Serra, Sara, Musacchi, Stefano, Wafula, Eric, Mattheis, James, dePamphilis, Claude W., Rudell, David
Publicado 2021

Tripal: a construction toolkit for online genome databases

por Ficklin, Stephen P., Sanderson, Lacey-Anne, Cheng, Chun-Huai, Staton, Margaret E., Lee, Taein, Cho, Il-Hyung, Jung, Sook, Bett, Kirstin E., Main, Doreen
Publicado 2011

A Fixed Cohort Field Study of Gene Expression in Circulating Leukocytes From Dairy Cows With and Without Mastitis

por McConnel, Craig S., Crisp, Sierra A., Biggs, Tyler D., Ficklin, Stephen P., Parrish, Lindsay M., Trombetta, Sophie C., Sischo, William M., Adams-Progar, Amber
Publicado 2020

Addressing noise in co-expression network construction

por Burns, Joshua J R, Shealy, Benjamin T, Greer, Mitchell S, Hadish, John A, McGowan, Matthew T, Biggs, Tyler, Smith, Melissa C, Feltus, F Alex, Ficklin, Stephen P
Publicado 2021

A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6

por Saski, Christopher A, Feltus, Frank A, Staton, Margaret E, Blackmon, Barbara P, Ficklin, Stephen P, Kuhn, David N, Schnell, Raymond J, Shapiro, Howard, Motamayor, Juan Carlos
Publicado 2011

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure

por Hadish, John A., Biggs, Tyler D., Shealy, Benjamin T., Bender, M. Reed, McKnight, Coleman B., Wytko, Connor, Smith, Melissa C., Feltus, F. Alex, Honaas, Loren, Ficklin, Stephen P.
Publicado 2022