Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

por Olm, Matthew R., West, Patrick T., Brooks, Brandon, Firek, Brian A., Baker, Robyn, Morowitz, Michael J., Banfield, Jillian F.
Publicado 2019

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome

por Brooks, Brandon, Olm, Matthew R., Firek, Brian A., Baker, Robyn, Thomas, Brian C., Morowitz, Michael J., Banfield, Jillian F.
Publicado 2017

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants

por Brooks, Brandon, Firek, Brian A, Miller, Christopher S, Sharon, Itai, Thomas, Brian C, Baker, Robyn, Morowitz, Michael J, Banfield, Jillian F
Publicado 2014

Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria

por Olm, Matthew R., Bhattacharya, Nicholas, Crits-Christoph, Alexander, Firek, Brian A., Baker, Robyn, Song, Yun S., Morowitz, Michael J., Banfield, Jillian F.
Publicado 2019

Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition

por Lou, Yue Clare, Olm, Matthew R., Diamond, Spencer, Crits-Christoph, Alexander, Firek, Brian A., Baker, Robyn, Morowitz, Michael J., Banfield, Jillian F.
Publicado 2021

Using strain-resolved analysis to identify contamination in metagenomics data

por Lou, Yue Clare, Hoff, Jordan, Olm, Matthew R., West-Roberts, Jacob, Diamond, Spencer, Firek, Brian A., Morowitz, Michael J., Banfield, Jillian F.
Publicado 2023

Maternal IgA protects against the development of necrotizing enterocolitis in preterm infants

por Gopalakrishna, Kathyayini P., Macadangdang, Benjamin R., Rogers, Matthew B., Tometich, Justin T., Firek, Brian A., Baker, Robyn, Ji, Junyi, Burr, Ansen H. P., Ma, Congrong, Good, Misty, Morowitz, Michael J., Hand, Timothy W.
Publicado 2019

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

por Brooks, Brandon, Olm, Matthew R., Firek, Brian A., Baker, Robyn, Geller-McGrath, David, Reimer, Sophia R., Soenjoyo, Karina R., Yip, Jennifer S., Dahan, Dylan, Thomas, Brian C., Morowitz, Michael J., Banfield, Jillian F.
Publicado 2018

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

por West, Patrick T., Peters, Samantha L., Olm, Matthew R., Yu, Feiqiao B., Gause, Haley, Lou, Yue Clare, Firek, Brian A., Baker, Robyn, Johnson, Alexander D., Morowitz, Michael J., Hettich, Robert L., Banfield, Jillian F.
Publicado 2021