BREC: an R package/Shiny app for automatically identifying heterochromatin boundaries and estimating local recombination rates along chromosomes

por Mansour, Yasmine, Chateau, Annie, Fiston-Lavier, Anna-Sophie
Publicado 2021

PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets

por Pradier, Léa, Tissot, Tazzio, Fiston-Lavier, Anna-Sophie, Bedhomme, Stéphanie
Publicado 2021

T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data

por Fiston-Lavier, Anna-Sophie, Carrigan, Matthew, Petrov, Dmitri A., González, Josefa
Publicado 2011

T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data

por Fiston-Lavier, Anna-Sophie, Barrón, Maite G., Petrov, Dmitri A., González, Josefa
Publicado 2015

Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions

por Guignon, Valentin, Breton, Catherine, Mariette, Jérôme, Sabot, François, Fumey, Julien, Lefort, Vincent, Fiston-Lavier, Anna-Sophie
Publicado 2021

TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches

por Mohamed, Mourdas, Sabot, François, Varoqui, Marion, Mugat, Bruno, Audouin, Katell, Pélisson, Alain, Fiston-Lavier, Anna-Sophie, Chambeyron, Séverine
Publicado 2023

T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data

por Bogaerts-Márquez, María, Barrón, Maite G, Fiston-Lavier, Anna-Sophie, Vendrell-Mir, Pol, Castanera, Raúl, Casacuberta, Josep M, González, Josefa
Publicado 2020

The ace-1 Locus Is Amplified in All Resistant Anopheles gambiae Mosquitoes: Fitness Consequences of Homogeneous and Heterogeneous Duplications

por Assogba, Benoît S., Milesi, Pascal, Djogbénou, Luc S., Berthomieu, Arnaud, Makoundou, Patrick, Baba-Moussa, Lamine S., Fiston-Lavier, Anna-Sophie, Belkhir, Khalid, Labbé, Pierrick, Weill, Mylène
Publicado 2016

The somatic piRNA pathway controls germline transposition over generations

por Barckmann, Bridlin, El-Barouk, Marianne, Pélisson, Alain, Mugat, Bruno, Li, Blaise, Franckhauser, Céline, Fiston Lavier, Anna-Sophie, Mirouze, Marie, Fablet, Marie, Chambeyron, Séverine
Publicado 2018

Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve Complex, Highly-Repetitive Transposable Elements

por McCoy, Rajiv C., Taylor, Ryan W., Blauwkamp, Timothy A., Kelley, Joanna L., Kertesz, Michael, Pushkarev, Dmitry, Petrov, Dmitri A., Fiston-Lavier, Anna-Sophie
Publicado 2014

Compact genome of the Antarctic midge is likely an adaptation to an extreme environment

por Kelley, Joanna L., Peyton, Justin T., Fiston-Lavier, Anna-Sophie, Teets, Nicholas M., Yee, Muh-Ching, Johnston, J. Spencer, Bustamante, Carlos D., Lee, Richard E., Denlinger, David L.
Publicado 2014

Cyprinid herpesvirus 3 Evolves In Vitro through an Assemblage of Haplotypes that Alternatively Become Dominant or Under-Represented

por Klafack, Sandro, Fiston-Lavier, Anna-Sophie, Bergmann, Sven M., Hammoumi, Saliha, Schröder, Lars, Fuchs, Walter, Lusiastuti, Angela, Lee, Pei-Yu, Heredia, Sarahi Vega, Gosselin-Grenet, Anne-Sophie, Avarre, Jean-Christophe
Publicado 2019

Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila

por Rech, Gabriel E., Bogaerts-Márquez, María, Barrón, Maite G., Merenciano, Miriam, Villanueva-Cañas, José Luis, Horváth, Vivien, Fiston-Lavier, Anna-Sophie, Luyten, Isabelle, Venkataram, Sandeep, Quesneville, Hadi, Petrov, Dmitri A., González, Josefa
Publicado 2019

A call for benchmarking transposable element annotation methods

por Hoen, Douglas R., Hickey, Glenn, Bourque, Guillaume, Casacuberta, Josep, Cordaux, Richard, Feschotte, Cédric, Fiston-Lavier, Anna-Sophie, Hua-Van, Aurélie, Hubley, Robert, Kapusta, Aurélie, Lerat, Emmanuelle, Maumus, Florian, Pollock, David D., Quesneville, Hadi, Smit, Arian, Wheeler, Travis J., Bureau, Thomas E., Blanchette, Mathieu
Publicado 2015

Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia

por Zhu, Xiaowei, Zhou, Bo, Pattni, Reenal, Gleason, Kelly, Tan, Chunfeng, Kalinowski, Agnieszka, Sloan, Steven, Fiston-Lavier, Anna-Sophie, Mariani, Jessica, Petrov, Dmitri, Barres, Ben A., Duncan, Laramie, Abyzov, Alexej, Vogel, Hannes, Moran, John V., Vaccarino, Flora M., Tamminga, Carol A., Levinson, Douglas F., Urban, Alexander E.
Publicado 2021