Shedding light on the ‘dark side’ of phylogenetic comparative methods

por Cooper, Natalie, Thomas, Gavin H., FitzJohn, Richard G.
Publicado 2016

Datastorr: a workflow and package for delivering successive versions of 'evolving data' directly into R

por Falster, Daniel S, FitzJohn, Richard G, Pennell, Matthew W, Cornwell, William K
Publicado 2019

Reproducible parallel inference and simulation of stochastic state space models using odin, dust, and mcstate

por FitzJohn, Richard G., Knock, Edward S., Whittles, Lilith K., Perez-Guzman, Pablo N., Bhatia, Sangeeta, Guntoro, Fernando, Watson, Oliver J., Whittaker, Charles, Ferguson, Neil M., Cori, Anne, Baguelin, Marc, Lees, John A.
Publicado 2021

Epidemiological drivers of transmissibility and severity of SARS-CoV-2 in England

por Perez-Guzman, Pablo N., Knock, Edward, Imai, Natsuko, Rawson, Thomas, Elmaci, Yasin, Alcada, Joana, Whittles, Lilith K., Thekke Kanapram, Divya, Sonabend, Raphael, Gaythorpe, Katy A. M., Hinsley, Wes, FitzJohn, Richard G., Volz, Erik, Verity, Robert, Ferguson, Neil M., Cori, Anne, Baguelin, Marc
Publicado 2023

Non-pharmaceutical interventions, vaccination, and the SARS-CoV-2 delta variant in England: a mathematical modelling study

por Sonabend, Raphael, Whittles, Lilith K, Imai, Natsuko, Perez-Guzman, Pablo N, Knock, Edward S, Rawson, Thomas, Gaythorpe, Katy A M, Djaafara, Bimandra A, Hinsley, Wes, FitzJohn, Richard G, Lees, John A, Kanapram, Divya Thekke, Volz, Erik M, Ghani, Azra C, Ferguson, Neil M, Baguelin, Marc, Cori, Anne
Publicado 2021

Quantifying the effect of delaying the second COVID-19 vaccine dose in England: a mathematical modelling study

por Imai, Natsuko, Rawson, Thomas, Knock, Edward S, Sonabend, Raphael, Elmaci, Yasin, Perez-Guzman, Pablo N, Whittles, Lilith K, Kanapram, Divya Thekke, Gaythorpe, Katy A M, Hinsley, Wes, Djaafara, Bimandra A, Wang, Haowei, Fraser, Keith, FitzJohn, Richard G, Hogan, Alexandra B, Doohan, Patrick, Ghani, Azra C, Ferguson, Neil M, Baguelin, Marc, Cori, Anne
Publicado 2023

Leveraging community mortality indicators to infer COVID-19 mortality and transmission dynamics in Damascus, Syria

por Watson, Oliver J., Alhaffar, Mervat, Mehchy, Zaki, Whittaker, Charles, Akil, Zack, Brazeau, Nicholas F., Cuomo-Dannenburg, Gina, Hamlet, Arran, Thompson, Hayley A., Baguelin, Marc, FitzJohn, Richard G., Knock, Edward, Lees, John A., Whittles, Lilith K., Mellan, Thomas, Winskill, Peter, Howard, Natasha, Clapham, Hannah, Checchi, Francesco, Ferguson, Neil, Ghani, Azra, Beals, Emma, Walker, Patrick
Publicado 2021

Anonymised and aggregated crowd level mobility data from mobile phones suggests that initial compliance with COVID-19 social distancing interventions was high and geographically co...

por Jeffrey, Benjamin, Walters, Caroline E., Ainslie, Kylie E. C., Eales, Oliver, Ciavarella, Constanze, Bhatia, Sangeeta, Hayes, Sarah, Baguelin, Marc, Boonyasiri, Adhiratha, Brazeau, Nicholas F., Cuomo-Dannenburg, Gina, FitzJohn, Richard G., Gaythorpe, Katy, Green, William, Imai, Natsuko, Mellan, Thomas A., Mishra, Swapnil, Nouvellet, Pierre, Unwin, H. Juliette T., Verity, Robert, Vollmer, Michaela, Whittaker, Charles, Ferguson, Neil M., Donnelly, Christl A., Riley, Steven
Publicado 2020

Key epidemiological drivers and impact of interventions in the 2020 SARS-CoV-2 epidemic in England

por Knock, Edward S., Whittles, Lilith K., Lees, John A., Perez-Guzman, Pablo N., Verity, Robert, FitzJohn, Richard G., Gaythorpe, Katy A. M., Imai, Natsuko, Hinsley, Wes, Okell, Lucy C., Rosello, Alicia, Kantas, Nikolas, Walters, Caroline E., Bhatia, Sangeeta, Watson, Oliver J., Whittaker, Charlie, Cattarino, Lorenzo, Boonyasiri, Adhiratha, Djaafara, Bimandra A., Fraser, Keith, Fu, Han, Wang, Haowei, Xi, Xiaoyue, Donnelly, Christl A., Jauneikaite, Elita, Laydon, Daniel J., White, Peter J., Ghani, Azra C., Ferguson, Neil M., Cori, Anne, Baguelin, Marc
Publicado 2021

Naomi: a new modelling tool for estimating HIV epidemic indicators at the district level in sub‐Saharan Africa

por Eaton, Jeffrey W., Dwyer‐Lindgren, Laura, Gutreuter, Steve, O'Driscoll, Megan, Stevens, Oliver, Bajaj, Sumali, Ashton, Rob, Hill, Alexandra, Russell, Emma, Esra, Rachel, Dolan, Nicolas, Anifowoshe, Yusuf O., Woodbridge, Mark, Fellows, Ian, Glaubius, Robert, Haeuser, Emily, Okonek, Taylor, Stover, John, Thomas, Matthew L., Wakefield, Jon, Wolock, Timothy M., Berry, Jonathan, Sabala, Tomasz, Heard, Nathan, Delgado, Stephen, Jahn, Andreas, Kalua, Thokozani, Chimpandule, Tiwonge, Auld, Andrew, Kim, Evelyn, Payne, Danielle, Johnson, Leigh F., FitzJohn, Richard G., Wanyeki, Ian, Mahy, Mary I., Shiraishi, Ray W.
Publicado 2021

Response to COVID-19 in South Korea and implications for lifting stringent interventions

por Dighe, Amy, Cattarino, Lorenzo, Cuomo-Dannenburg, Gina, Skarp, Janetta, Imai, Natsuko, Bhatia, Sangeeta, Gaythorpe, Katy A. M., Ainslie, Kylie E. C., Baguelin, Marc, Bhatt, Samir, Boonyasiri, Adhiratha, Brazeau, Nicholas F., Cooper, Laura V., Coupland, Helen, Cucunuba, Zulma, Dorigatti, Ilaria, Eales, Oliver D., van Elsland, Sabine L., FitzJohn, Richard G., Green, William D., Haw, David J., Hinsley, Wes, Knock, Edward, Laydon, Daniel J., Mellan, Thomas, Mishra, Swapnil, Nedjati-Gilani, Gemma, Nouvellet, Pierre, Pons-Salort, Margarita, Thompson, Hayley A., Unwin, H. Juliette T., Verity, Robert, Vollmer, Michaela A. C., Walters, Caroline E., Watson, Oliver J., Whittaker, Charles, Whittles, Lilith K., Ghani, Azra C., Donnelly, Christl A., Ferguson, Neil M., Riley, Steven
Publicado 2020

State-level tracking of COVID-19 in the United States

por Unwin, H. Juliette T., Mishra, Swapnil, Bradley, Valerie C., Gandy, Axel, Mellan, Thomas A., Coupland, Helen, Ish-Horowicz, Jonathan, Vollmer, Michaela A. C., Whittaker, Charles, Filippi, Sarah L., Xi, Xiaoyue, Monod, Mélodie, Ratmann, Oliver, Hutchinson, Michael, Valka, Fabian, Zhu, Harrison, Hawryluk, Iwona, Milton, Philip, Ainslie, Kylie E. C., Baguelin, Marc, Boonyasiri, Adhiratha, Brazeau, Nick F., Cattarino, Lorenzo, Cucunuba, Zulma, Cuomo-Dannenburg, Gina, Dorigatti, Ilaria, Eales, Oliver D., Eaton, Jeffrey W., van Elsland, Sabine L., FitzJohn, Richard G., Gaythorpe, Katy A. M., Green, William, Hinsley, Wes, Jeffrey, Benjamin, Knock, Edward, Laydon, Daniel J., Lees, John, Nedjati-Gilani, Gemma, Nouvellet, Pierre, Okell, Lucy, Parag, Kris V., Siveroni, Igor, Thompson, Hayley A., Walker, Patrick, Walters, Caroline E., Watson, Oliver J., Whittles, Lilith K., Ghani, Azra C., Ferguson, Neil M., Riley, Steven, Donnelly, Christl A., Bhatt, Samir, Flaxman, Seth
Publicado 2020

Reduction in mobility and COVID-19 transmission

por Nouvellet, Pierre, Bhatia, Sangeeta, Cori, Anne, Ainslie, Kylie E. C., Baguelin, Marc, Bhatt, Samir, Boonyasiri, Adhiratha, Brazeau, Nicholas F., Cattarino, Lorenzo, Cooper, Laura V., Coupland, Helen, Cucunuba, Zulma M., Cuomo-Dannenburg, Gina, Dighe, Amy, Djaafara, Bimandra A., Dorigatti, Ilaria, Eales, Oliver D., van Elsland, Sabine L., Nascimento, Fabricia F., FitzJohn, Richard G., Gaythorpe, Katy A. M., Geidelberg, Lily, Green, William D., Hamlet, Arran, Hauck, Katharina, Hinsley, Wes, Imai, Natsuko, Jeffrey, Benjamin, Knock, Edward, Laydon, Daniel J., Lees, John A., Mangal, Tara, Mellan, Thomas A., Nedjati-Gilani, Gemma, Parag, Kris V., Pons-Salort, Margarita, Ragonnet-Cronin, Manon, Riley, Steven, Unwin, H. Juliette T., Verity, Robert, Vollmer, Michaela A. C., Volz, Erik, Walker, Patrick G. T., Walters, Caroline E., Wang, Haowei, Watson, Oliver J., Whittaker, Charles, Whittles, Lilith K., Xi, Xiaoyue, Ferguson, Neil M., Donnelly, Christl A.
Publicado 2021

Potential impact of the COVID-19 pandemic on HIV, tuberculosis, and malaria in low-income and middle-income countries: a modelling study

por Hogan, Alexandra B, Jewell, Britta L, Sherrard-Smith, Ellie, Vesga, Juan F, Watson, Oliver J, Whittaker, Charles, Hamlet, Arran, Smith, Jennifer A, Winskill, Peter, Verity, Robert, Baguelin, Marc, Lees, John A, Whittles, Lilith K, Ainslie, Kylie E C, Bhatt, Samir, Boonyasiri, Adhiratha, Brazeau, Nicholas F, Cattarino, Lorenzo, Cooper, Laura V, Coupland, Helen, Cuomo-Dannenburg, Gina, Dighe, Amy, Djaafara, Bimandra A, Donnelly, Christl A, Eaton, Jeff W, van Elsland, Sabine L, FitzJohn, Richard G, Fu, Han, Gaythorpe, Katy A M, Green, William, Haw, David J, Hayes, Sarah, Hinsley, Wes, Imai, Natsuko, Laydon, Daniel J, Mangal, Tara D, Mellan, Thomas A, Mishra, Swapnil, Nedjati-Gilani, Gemma, Parag, Kris V, Thompson, Hayley A, Unwin, H Juliette T, Vollmer, Michaela A C, Walters, Caroline E, Wang, Haowei, Wang, Yuanrong, Xi, Xiaoyue, Ferguson, Neil M, Okell, Lucy C, Churcher, Thomas S, Arinaminpathy, Nimalan, Ghani, Azra C, Walker, Patrick G T, Hallett, Timothy B
Publicado 2020

Database of epidemic trends and control measures during the first wave of COVID-19 in mainland China

por Fu, Han, Wang, Haowei, Xi, Xiaoyue, Boonyasiri, Adhiratha, Wang, Yuanrong, Hinsley, Wes, Fraser, Keith J., McCabe, Ruth, Olivera Mesa, Daniela, Skarp, Janetta, Ledda, Alice, Dewé, Tamsin, Dighe, Amy, Winskill, Peter, van Elsland, Sabine L., Ainslie, Kylie E.C., Baguelin, Marc, Bhatt, Samir, Boyd, Olivia, Brazeau, Nicholas F., Cattarino, Lorenzo, Charles, Giovanni, Coupland, Helen, Cucunuba, Zulma M., Cuomo-Dannenburg, Gina, Donnelly, Christl A., Dorigatti, Ilaria, Eales, Oliver D., FitzJohn, Richard G., Flaxman, Seth, Gaythorpe, Katy A.M., Ghani, Azra C., Green, William D., Hamlet, Arran, Hauck, Katharina, Haw, David J., Jeffrey, Benjamin, Laydon, Daniel J., Lees, John A., Mellan, Thomas, Mishra, Swapnil, Nedjati-Gilani, Gemma, Nouvellet, Pierre, Okell, Lucy, Parag, Kris V., Ragonnet-Cronin, Manon, Riley, Steven, Schmit, Nora, Thompson, Hayley A., Unwin, H.Juliette T., Verity, Robert, Vollmer, Michaela A.C., Volz, Erik, Walker, Patrick G.T., Walters, Caroline E., Watson, Oliver J., Whittaker, Charles, Whittles, Lilith K., Imai, Natsuko, Bhatia, Sangeeta, Ferguson, Neil M.
Publicado 2021