Competing constraints shape the nonequilibrium limits of cellular decision-making

por Lammers, Nicholas C., Flamholz, Avi I., Garcia, Hernan G.
Publicado 2023

Optical O(2) Sensors Also Respond to Redox Active Molecules Commonly Secreted by Bacteria

por Flamholz, Avi I., Saccomano, Samuel, Cash, Kevin, Newman, Dianne K.
Publicado 2022

Protein cost minimization promotes the emergence of coenzyme redundancy

por Goldford, Joshua E., George, Ashish B., Flamholz, Avi I., Segrè, Daniel
Publicado 2022

eQuilibrator 3.0: a database solution for thermodynamic constant estimation

por Beber, Moritz E, Gollub, Mattia G, Mozaffari, Dana, Shebek, Kevin M, Flamholz, Avi I, Milo, Ron, Noor, Elad
Publicado 2021

Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle

por Claassens, Nico J., Scarinci, Giovanni, Fischer, Axel, Flamholz, Avi I., Newell, William, Frielingsdorf, Stefan, Lenz, Oliver, Bar-Even, Arren
Publicado 2020

Uniform binding and negative catalysis at the origin of enzymes

por Noor, Elad, Flamholz, Avi I., Jayaraman, Vijay, Ross, Brian L., Cohen, Yair, Patrick, Wayne M., Gruic‐Sovulj, Ita, Tawfik, Dan S.
Publicado 2022

Revisiting Trade-offs between Rubisco Kinetic Parameters

por Flamholz, Avi I., Prywes, Noam, Moran, Uri, Davidi, Dan, Bar-On, Yinon M., Oltrogge, Luke M., Alves, Rui, Savage, David, Milo, Ron
Publicado 2019

Anthroponumbers.org: A quantitative database of human impacts on Planet Earth

por Chure, Griffin, Banks, Rachel A., Flamholz, Avi I., Sarai, Nicholas S., Kamb, Mason, Lopez-Gomez, Ignacio, Bar-On, Yinon, Milo, Ron, Phillips, Rob
Publicado 2022

Trajectories for the evolution of bacterial CO(2)-concentrating mechanisms

por Flamholz, Avi I., Dugan, Eli, Panich, Justin, Desmarais, John J., Oltrogge, Luke M., Fischer, Woodward W., Singer, Steven W., Savage, David F.
Publicado 2022

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods

por Huttenhower, Curtis, Flamholz, Avi I, Landis, Jessica N, Sahi, Sauhard, Myers, Chad L, Olszewski, Kellen L, Hibbs, Matthew A, Siemers, Nathan O, Troyanskaya, Olga G, Coller, Hilary A
Publicado 2007

Functional reconstitution of a bacterial CO(2) concentrating mechanism in Escherichia coli

por Flamholz, Avi I, Dugan, Eli, Blikstad, Cecilia, Gleizer, Shmuel, Ben-Nissan, Roee, Amram, Shira, Antonovsky, Niv, Ravishankar, Sumedha, Noor, Elad, Bar-Even, Arren, Milo, Ron, Savage, David F
Publicado 2020

Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO(2) through geologic time should be reevaluated

por Wang, Renée Z., Nichols, Robert J., Liu, Albert K., Flamholz, Avi I., Artier, Juliana, Banda, Doug M., Savage, David F., Eiler, John M., Shih, Patrick M., Fischer, Woodward W.
Publicado 2023

Tools for interpretation of wastewater SARS-CoV-2 temporal and spatial trends demonstrated with data collected in the San Francisco Bay Area

por Greenwald, Hannah D., Kennedy, Lauren C., Hinkle, Adrian, Whitney, Oscar N., Fan, Vinson B., Crits-Christoph, Alexander, Harris-Lovett, Sasha, Flamholz, Avi I., Al-Shayeb, Basem, Liao, Lauren D., Beyers, Matt, Brown, Daniel, Chakrabarti, Alicia R., Dow, Jason, Frost, Dan, Koekemoer, Mark, Lynch, Chris, Sarkar, Payal, White, Eileen, Kantor, Rose, Nelson, Kara L.
Publicado 2021