Coolpup.py: versatile pile-up analysis of Hi-C data

por Flyamer, Ilya M, Illingworth, Robert S, Bickmore, Wendy A
Publicado 2020

Ultra-long-range interactions between active regulatory elements

por Friman, Elias T., Flyamer, Ilya M., Marenduzzo, Davide, Boyle, Shelagh, Bickmore, Wendy A.
Publicado 2023

From bedside to bench: regulation of host factors in SARS-CoV-2 infection

por Ong, Samantha Y. Q., Flyamer, Ilya M., Bickmore, Wendy A., Biddie, Simon C.
Publicado 2021

A central role for canonical PRC1 in shaping the 3D nuclear landscape

por Boyle, Shelagh, Flyamer, Ilya M., Williamson, Iain, Sengupta, Dipta, Bickmore, Wendy A., Illingworth, Robert S.
Publicado 2020

Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells

por Dunican, Donnchadh S., Mjoseng, Heidi K., Duthie, Leanne, Flyamer, Ilya M., Bickmore, Wendy A., Meehan, Richard R.
Publicado 2020

Pairtools: from sequencing data to chromosome contacts

por Abdennur, Nezar, Fudenberg, Geoffrey, Flyamer, Ilya M., Galitsyna, Aleksandra A., Goloborodko, Anton, Imakaev, Maxim, Venev, Sergey V.
Publicado 2023

A mechanism of cohesin‐dependent loop extrusion organizes zygotic genome architecture

por Gassler, Johanna, Brandão, Hugo B, Imakaev, Maxim, Flyamer, Ilya M, Ladstätter, Sabrina, Bickmore, Wendy A, Peters, Jan‐Michael, Mirny, Leonid A, Tachibana, Kikuë
Publicado 2017

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition

por Flyamer, Ilya M., Gassler, Johanna, Imakaev, Maxim, Brandão, Hugo B., Ulianov, Sergey V., Abdennur, Nezar, Razin, Sergey V., Mirny, Leonid A., Tachibana-Konwalski, Kikuë
Publicado 2017

Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure

por Ulianov, Sergey V., Galitsyna, Aleksandra A., Flyamer, Ilya M., Golov, Arkadiy K., Khrameeva, Ekaterina E., Imakaev, Maxim V., Abdennur, Nezar A., Gelfand, Mikhail S., Gavrilov, Alexey A., Razin, Sergey V.
Publicado 2017

Trisomies Reorganize Human 3D Genome

por Zhegalova, Irina V., Vasiluev, Petr A., Flyamer, Ilya M., Shtompel, Anastasia S., Glazyrina, Eugene, Shilova, Nadezda, Minzhenkova, Marina, Markova, Zhanna, Petrova, Natalia V., Dashinimaev, Erdem B., Razin, Sergey V., Ulianov, Sergey V.
Publicado 2023

DNA Methylation Directs Polycomb-Dependent 3D Genome Re-organization in Naive Pluripotency

por McLaughlin, Katy, Flyamer, Ilya M., Thomson, John P., Mjoseng, Heidi K., Shukla, Ruchi, Williamson, Iain, Grimes, Graeme R., Illingworth, Robert S., Adams, Ian R., Pennings, Sari, Meehan, Richard R., Bickmore, Wendy A.
Publicado 2019

Nuclear organisation and replication timing are coupled through RIF1–PP1 interaction

por Gnan, Stefano, Flyamer, Ilya M., Klein, Kyle N., Castelli, Eleonora, Rapp, Alexander, Maiser, Andreas, Chen, Naiming, Weber, Patrick, Enervald, Elin, Cardoso, M. Cristina, Bickmore, Wendy A., Gilbert, David M., Buonomo, Sara C. B.
Publicado 2021

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains

por Ulianov, Sergey V., Khrameeva, Ekaterina E., Gavrilov, Alexey A., Flyamer, Ilya M., Kos, Pavel, Mikhaleva, Elena A., Penin, Aleksey A., Logacheva, Maria D., Imakaev, Maxim V., Chertovich, Alexander, Gelfand, Mikhail S., Shevelyov, Yuri Y., Razin, Sergey V.
Publicado 2016

MCM complexes are barriers that restrict cohesin-mediated loop extrusion

por Dequeker, Bart J. H., Scherr, Matthias J., Brandão, Hugo B., Gassler, Johanna, Powell, Sean, Gaspar, Imre, Flyamer, Ilya M., Lalic, Aleksandar, Tang, Wen, Stocsits, Roman, Davidson, Iain F., Peters, Jan-Michael, Duderstadt, Karl E., Mirny, Leonid A., Tachibana, Kikuë
Publicado 2022

Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila

por Ulianov, Sergey V., Doronin, Semen A., Khrameeva, Ekaterina E., Kos, Pavel I., Luzhin, Artem V., Starikov, Sergei S., Galitsyna, Aleksandra A., Nenasheva, Valentina V., Ilyin, Artem A., Flyamer, Ilya M., Mikhaleva, Elena A., Logacheva, Mariya D., Gelfand, Mikhail S., Chertovich, Alexander V., Gavrilov, Alexey A., Razin, Sergey V., Shevelyov, Yuri Y.
Publicado 2019

Order and stochasticity in the folding of individual Drosophila genomes

por Ulianov, Sergey V., Zakharova, Vlada V., Galitsyna, Aleksandra A., Kos, Pavel I., Polovnikov, Kirill E., Flyamer, Ilya M., Mikhaleva, Elena A., Khrameeva, Ekaterina E., Germini, Diego, Logacheva, Mariya D., Gavrilov, Alexey A., Gorsky, Alexander S., Nechaev, Sergey K., Gelfand, Mikhail S., Vassetzky, Yegor S., Chertovich, Alexander V., Shevelyov, Yuri Y., Razin, Sergey V.
Publicado 2021