Comparison of SHAPE reagents for mapping RNA structures inside living cells

por Lee, Byron, Flynn, Ryan A., Kadina, Anastasia, Guo, Jimmy K., Kool, Eric T., Chang, Howard Y.
Publicado 2017

An atlas of posttranslational modifications on RNA binding proteins

por England, Whitney E, Wang, Jingtian, Chen, Siwei, Baldi, Pierre, Flynn, Ryan A, Spitale, Robert C
Publicado 2022

fSHAPE, fSHAPE-eCLIP, and SHAPE-eCLIP probe transcript regions that interact with specific proteins

por Corley, Meredith, Flynn, Ryan A., Blue, Steven M., Yee, Brian A., Chang, Howard Y., Yeo, Gene W.
Publicado 2021

Essential role of lncRNA binding for WDR5 maintenance of active chromatin and embryonic stem cell pluripotency

por Yang, Yul W, Flynn, Ryan A, Chen, Yong, Qu, Kun, Wan, Bingbing, Wang, Kevin C, Lei, Ming, Chang, Howard Y
Publicado 2014

Diverse functional elements in RNA predicted transcriptome-wide by orthogonal RNA structure probing

por Chan, Dalen, Feng, Chao, England, Whitney E, Wyman, Dana, Flynn, Ryan A, Wang, Xiuye, Shi, Yongsheng, Mortazavi, Ali, Spitale, Robert C
Publicado 2021

Landscape and variation of RNA secondary structure across the human transcriptome

por Wan, Yue, Qu, Kun, Zhang, Qiangfeng Cliff, Flynn, Ryan A., Manor, Ohad, Ouyang, Zhengqing, Zhang, Jiajing, Spitale, Robert C., Snyder, Michael P., Segal, Eran, Chang, Howard Y.
Publicado 2014

Dissecting noncoding and pathogen RNA–protein interactomes

por Flynn, Ryan A., Martin, Lance, Spitale, Robert C., Do, Brian T., Sagan, Selena M., Zarnegar, Brian, Qu, Kun, Khavari, Paul A., Quake, Stephen R., Sarnow, Peter, Chang, Howard Y.
Publicado 2015

7SK-BAF axis controls pervasive transcription at enhancers

por Flynn, Ryan A., Do, Brian T., Rubin, Adam J., Calo, Eliezer, Lee, Byron, Kuchelmeister, Hannes, Rale, Michael, Chu, Ci, Kool, Eric T., Wysocka, Joanna, Khavari, Paul A., Chang, Howard Y.
Publicado 2016

Structural imprints in vivo decode RNA regulatory mechanisms

por Spitale, Robert C., Flynn, Ryan A., Zhang, Qiangfeng Cliff, Crisalli, Pete, Lee, Byron, Jung, Jong-Wha, Kuchelmeister, Hannes Y., Batista, Pedro J., Torre, Eduardo A., Kool, Eric T., Chang, Howard Y.
Publicado 2015

Novel Gene Expression Profile of Women with Intrinsic Skin Youthfulness by Whole Transcriptome Sequencing

por Xu, Jin, Spitale, Robert C., Guan, Linna, Flynn, Ryan A., Torre, Eduardo A., Li, Rui, Raber, Inbar, Qu, Kun, Kern, Dale, Knaggs, Helen E., Chang, Howard Y., Chang, Anne Lynn S.
Publicado 2016

Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells

por Grow, Edward J., Flynn, Ryan A., Chavez, Shawn L., Bayless, Nicholas L., Wossidlo, Mark, Wesche, Daniel, Martin, Lance, Ware, Carol, Blish, Catherine A., Chang, Howard Y., Reijo Pera, Renee A., Wysocka, Joanna
Publicado 2015

A memory of eS25 loss drives resistance phenotypes

por Johnson, Alex G, Flynn, Ryan A, Lapointe, Christopher P, Ooi, Yaw Shin, Zhao, Michael L, Richards, Christopher M, Qiao, Wenjie, Yamada, Shizuka B, Couthouis, Julien, Gitler, Aaron D, Carette, Jan E, Puglisi, Joseph D
Publicado 2020

Proteomic analysis of young and old mouse hematopoietic stem cells and their progenitors reveals post-transcriptional regulation in stem cells

por Zaro, Balyn W, Noh, Joseph J, Mascetti, Victoria L, Demeter, Janos, George, Benson, Zukowska, Monika, Gulati, Gunsagar S, Sinha, Rahul, Flynn, Ryan A, Banuelos, Allison, Zhang, Allison, Wilkinson, Adam C, Jackson, Peter, Weissman, Irving L
Publicado 2020

An inducible long noncoding RNA amplifies DNA damage signaling

por Schmitt, Adam M., Garcia, Julia T., Hung, Tiffany, Flynn, Ryan A., Shen, Ying, Qu, Kun, Payumo, Alexander Y., Peres-da-Silva, Ashwin, Broz, Daniela Kenzelmann, Baum, Rachel, Guo, Shuling, Chen, James K., Attardi, Laura D., Chang, Howard Y.
Publicado 2016

Functional significance of U2AF1 S34F mutations in lung adenocarcinomas

por Esfahani, Mohammad S., Lee, Luke J., Jeon, Young-Jun, Flynn, Ryan A., Stehr, Henning, Hui, Angela B., Ishisoko, Noriko, Kildebeck, Eric, Newman, Aaron M., Bratman, Scott V., Porteus, Matthew H., Chang, Howard Y., Alizadeh, Ash A., Diehn, Maximilian
Publicado 2019

Systematic discovery and functional interrogation of SARS-CoV-2 viral RNA-host protein interactions during infection

por Flynn, Ryan A., Belk, Julia A., Qi, Yanyan, Yasumoto, Yuki, Schmitz, Cameron O., Mumbach, Maxwell R., Limaye, Aditi, Wei, Jin, Alfajaro, Mia Madel, Parker, Kevin R., Chang, Howard Y., Horvath, Tamas L., Carette, Jan E., Bertozzi, Carolyn, Wilen, Craig B., Satpathy, Ansuman T.
Publicado 2020

Nuclear accumulation of host transcripts during Zika Virus Infection

por Leon, Kristoffer E., Khalid, Mir M., Flynn, Ryan A., Fontaine, Krystal A., Nguyen, Thong T., Kumar, G. Renuka, Simoneau, Camille R., Tomar, Sakshi, Jimenez-Morales, David, Dunlap, Mariah, Kaye, Julia, Shah, Priya S., Finkbeiner, Steven, Krogan, Nevan J., Bertozzi, Carolyn, Carette, Jan E., Ott, Melanie
Publicado 2023

An RNA-Centric Dissection of Host Complexes Controlling Flavivirus Infection

por Ooi, Yaw Shin, Majzoub, Karim, Flynn, Ryan A., Mata, Miguel A., Diep, Jonathan, Li, Jason Kenichi, van Buuren, Nicholas, Rumachik, Neil, Johnson, Alex G., Puschnik, Andreas S., Marceau, Caleb D., Mlera, Luwanika, Grabowski, Jeffrey M., Kirkegaard, Karla, Bloom, Marshall E., Sarnow, Peter, Bertozzi, Carolyn R., Carette, Jan E.
Publicado 2019

RNA helicase DDX21 mediates nucleotide stress responses in neural crest and melanoma cells

por Santoriello, Cristina, Sporrij, Audrey, Yang, Song, Flynn, Ryan A., Henriques, Telmo, Dorjsuren, Bilguujin, Greig, Eugenia Custo, McCall, Wyatt, Stanhope, Meredith E., Fazio, Maurizio, Superdock, Michael, Lichtig, Asher, Adatto, Isaac, Abraham, Brian J., Kalocsay, Marian, Jurynec, Michael, Zhou, Yi, Adelman, Karen, Calo, Eliezer, Zon, Leonard I.
Publicado 2020

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers

por Brunner, Alayne L, Beck, Andrew H, Edris, Badreddin, Sweeney, Robert T, Zhu, Shirley X, Li, Rui, Montgomery, Kelli, Varma, Sushama, Gilks, Thea, Guo, Xiangqian, Foley, Joseph W, Witten, Daniela M, Giacomini, Craig P, Flynn, Ryan A, Pollack, Jonathan R, Tibshirani, Robert, Chang, Howard Y, van de Rijn, Matt, West, Robert B
Publicado 2012