Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method

por Foley, Joseph W, Katagiri, Fumiaki
Publicado 2008

Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines

por Foley, Joseph W, Sidow, Arend
Publicado 2013

Cost-effective DNA methylation profiling by FML-seq

por Foley, Joseph W, Zhu, Shirley X, West, Robert B
Publicado 2023

Cost-effective DNA methylation profiling by FML-seq

por Foley, Joseph W., Zhu, Shirley X., West, Robert B.
Publicado 2023

Gene expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ

por Foley, Joseph W., Zhu, Chunfang, Jolivet, Philippe, Zhu, Shirley X., Lu, Peipei, Meaney, Michael J., West, Robert B.
Publicado 2019

The latency-associated transcript locus of herpes simplex virus 1 is a virulence determinant in human skin

por Vanni, Emilia A. H., Foley, Joseph W., Davison, Andrew J., Sommer, Marvin, Liu, Dongmei, Sung, Phillip, Moffat, Jennifer, Zerboni, Leigh, Arvin, Ann M.
Publicado 2020

3′-End Sequencing for Expression Quantification (3SEQ) from Archival Tumor Samples

por Beck, Andrew H., Weng, Ziming, Witten, Daniela M., Zhu, Shirley, Foley, Joseph W., Lacroute, Phil, Smith, Cheryl L., Tibshirani, Robert, van de Rijn, Matt, Sidow, Arend, West, Robert B.
Publicado 2010

Widespread Shortening of 3’ Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection

por Pai, Athma A., Baharian, Golshid, Pagé Sabourin, Ariane, Brinkworth, Jessica F., Nédélec, Yohann, Foley, Joseph W., Grenier, Jean-Christophe, Siddle, Katherine J., Dumaine, Anne, Yotova, Vania, Johnson, Zachary P., Lanford, Robert E., Burge, Christopher B., Barreiro, Luis B.
Publicado 2016

The microdissected gene expression landscape of nasopharyngeal cancer reveals vulnerabilities in FGF and noncanonical NF-κB signaling

por Tay, Joshua K., Zhu, Chunfang, Shin, June Ho, Zhu, Shirley X., Varma, Sushama, Foley, Joseph W., Vennam, Sujay, Yip, Yim Ling, Goh, Chuan Keng, Wang, De Yun, Loh, Kwok Seng, Tsao, Sai Wah, Le, Quynh-Thu, Sunwoo, John B., West, Robert B.
Publicado 2022

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers

por Brunner, Alayne L, Beck, Andrew H, Edris, Badreddin, Sweeney, Robert T, Zhu, Shirley X, Li, Rui, Montgomery, Kelli, Varma, Sushama, Gilks, Thea, Guo, Xiangqian, Foley, Joseph W, Witten, Daniela M, Giacomini, Craig P, Flynn, Ryan A, Pollack, Jonathan R, Tibshirani, Robert, Chang, Howard Y, van de Rijn, Matt, West, Robert B
Publicado 2012