RNA-Seq Gene Profiling - A Systematic Empirical Comparison

por Fonseca, Nuno A., Marioni, John, Brazma, Alvis
Publicado 2014

Gene Classification Based on Amino Acid Motifs and Residues: The DLX (distal-less) Test Case

por Fonseca, Nuno A., Vieira, Cristina P., Vieira, Jorge
Publicado 2009

Protein evolution of ANTP and PRD homeobox genes

por Fonseca, Nuno A, Vieira, Cristina P, Holland, Peter WH, Vieira, Jorge
Publicado 2008

Evolutionary patterns at the RNase based gametophytic self - incompatibility system in two divergent Rosaceae groups (Maloideae and Prunus)

por Vieira, Jorge, Ferreira, Pedro G, Aguiar, Bruno, Fonseca, Nuno A, Vieira, Cristina P
Publicado 2010

Complete Genome Sequence Obtained by Nanopore and Illumina Hybrid Assembly of Xanthomonas arboricola pv. juglandis CPBF 427, Isolated from Buds of a Walnut Tree

por Teixeira, Miguel, Fernandes, Camila, Chaves, Cátia, Pinto, Joana, Tavares, Fernando, Fonseca, Nuno A.
Publicado 2021

Complete Genome Sequences of Walnut-Associated Xanthomonas euroxanthea Strains CPBF 367 and CPBF 426 Obtained by Illumina/Nanopore Hybrid Assembly

por Teixeira, Miguel, Martins, Leonor, Fernandes, Camila, Chaves, Cátia, Pinto, Joana, Tavares, Fernando, Fonseca, Nuno A.
Publicado 2020

The RNASeq-er API—a gateway to systematically updated analysis of public RNA-seq data

por Petryszak, Robert, Fonseca, Nuno A, Füllgrabe, Anja, Huerta, Laura, Keays, Maria, Tang, Y Amy, Brazma, Alvis
Publicado 2017

Comparative Genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis Strains Isolated from a Single Walnut Host Tree

por Fernandes, Camila, Martins, Leonor, Teixeira, Miguel, Blom, Jochen, Pothier, Joël F., Fonseca, Nuno A., Tavares, Fernando
Publicado 2021

The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese Diptera 01

por Ferreira, Sonia A, Andrade, Rui, Gonçalves, Ana R, Sousa, Pedro, Paupério, Joana, Fonseca, Nuno A, Beja, Pedro
Publicado 2020

Convergent Evolution at the Gametophytic Self-Incompatibility System in Malus and Prunus

por Aguiar, Bruno, Vieira, Jorge, Cunha, Ana E., Fonseca, Nuno A., Iezzoni, Amy, van Nocker, Steve, Vieira, Cristina P.
Publicado 2015

Drosophila americana as a Model Species for Comparative Studies on the Molecular Basis of Phenotypic Variation

por Fonseca, Nuno A., Morales-Hojas, Ramiro, Reis, Micael, Rocha, Helder, Vieira, Cristina P., Nolte, Viola, Schlötterer, Christian, Vieira, Jorge
Publicado 2013

Inoculated Cell Density as a Determinant Factor of the Growth Dynamics and Metastatic Efficiency of a Breast Cancer Murine Model

por Gregório, Ana C., Fonseca, Nuno A., Moura, Vera, Lacerda, Manuela, Figueiredo, Paulo, Simões, Sérgio, Dias, Sérgio, Moreira, João Nuno
Publicado 2016

Gastric Microbiome Diversities in Gastric Cancer Patients from Europe and Asia Mimic the Human Population Structure and Are Partly Driven by Microbiome Quantitative Trait Loci

por Cavadas, Bruno, Camacho, Rui, Ferreira, Joana C., Ferreira, Rui M., Figueiredo, Ceu, Brazma, Alvis, Fonseca, Nuno A., Pereira, Luísa
Publicado 2020

High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

por Zhang, Yiqun, Chen, Fengju, Fonseca, Nuno A., He, Yao, Fujita, Masashi, Nakagawa, Hidewaki, Zhang, Zemin, Brazma, Alvis, Creighton, Chad J.
Publicado 2020

Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

por Zhang, Yiqun, Chen, Fengju, Fonseca, Nuno A., He, Yao, Fujita, Masashi, Nakagawa, Hidewaki, Zhang, Zemin, Brazma, Alvis, Creighton, Chad J.
Publicado 2022

Inferences on specificity recognition at the Malus×domestica gametophytic self-incompatibility system

por Pratas, Maria I., Aguiar, Bruno, Vieira, Jorge, Nunes, Vanessa, Teixeira, Vanessa, Fonseca, Nuno A., Iezzoni, Amy, van Nocker, Steve, Vieira, Cristina P.
Publicado 2018

Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S pollen genes support the non-self recognition by multiple factors model

por Aguiar, Bruno, Vieira, Jorge, Cunha, Ana E., Fonseca, Nuno A., Reboiro-Jato, David, Reboiro-Jato, Miguel, Fdez-Riverola, Florentino, Raspé, Olivier, Vieira, Cristina P.
Publicado 2013

High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA–tRNA interface

por Schmitt, Bianca M., Rudolph, Konrad L.M., Karagianni, Panagiota, Fonseca, Nuno A., White, Robert J., Talianidis, Iannis, Odom, Duncan T., Marioni, John C., Kutter, Claudia
Publicado 2014

Two independent modes of chromatin organization revealed by cohesin removal

por Schwarzer, Wibke, Abdennur, Nezar, Goloborodko, Anton, Pekowska, Aleksandra, Fudenberg, Geoffrey, Loe-Mie, Yann, Fonseca, Nuno A, Huber, Wolfgang, Haering, Christian, Mirny, Leonid, Spitz, Francois
Publicado 2017

Shedding Light on the African Enigma: In Vitro Testing of Homo sapiens-Helicobacter pylori Coevolution

por Cavadas, Bruno, Leite, Marina, Pedro, Nicole, Magalhães, Ana C., Melo, Joana, Correia, Marcelo, Máximo, Valdemar, Camacho, Rui, Fonseca, Nuno A., Figueiredo, Ceu, Pereira, Luísa
Publicado 2021