A34 Automated profiling of the human virome from raw metagenomic data

por Moosa, Yumna, Vilsker, Michael, Vanden Eyden, Ewout, Fonseca, Vagner, Nooij, Sam, Deforche, Koen, de Oliveira, Tulio
Publicado 2017

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

por Cleemput, Sara, Dumon, Wim, Fonseca, Vagner, Abdool Karim, Wasim, Giovanetti, Marta, Alcantara, Luiz Carlos, Deforche, Koen, de Oliveira, Tulio
Publicado 2020

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

por Cleemput, Sara, Dumon, Wim, Fonseca, Vagner, Karim, Wasim Abdool, Giovanetti, Marta, Alcantara, Luiz Carlos, Deforche, Koen, de Oliveira, Tulio
Publicado 2020

Current Affairs of Microbial Genome-Wide Association Studies: Approaches, Bottlenecks and Analytical Pitfalls

por San, James Emmanuel, Baichoo, Shakuntala, Kanzi, Aquillah, Moosa, Yumna, Lessells, Richard, Fonseca, Vagner, Mogaka, John, Power, Robert, de Oliveira, Tulio
Publicado 2020

Human Retrovirus Codon Usage from tRNA Point of View: Therapeutic Insights

por Frias, Diego, Monteiro-Cunha, Joana P., Mota-Miranda, Aline C., Fonseca, Vagner S., de Oliveira, Tulio, Galvao-Castro, Bernardo, Alcantara, Luiz C. J.
Publicado 2013

Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment

por Juma, John, Fonseca, Vagner, Konongoi, Samson L., van Heusden, Peter, Roesel, Kristina, Sang, Rosemary, Bett, Bernard, Christoffels, Alan, de Oliveira, Tulio, Oyola, Samuel O.
Publicado 2022

Genome Detective: an automated system for virus identification from high-throughput sequencing data

por Vilsker, Michael, Moosa, Yumna, Nooij, Sam, Fonseca, Vagner, Ghysens, Yoika, Dumon, Korneel, Pauwels, Raf, Alcantara, Luiz Carlos, Vanden Eynden, Ewout, Vandamme, Anne-Mieke, Deforche, Koen, de Oliveira, Tulio
Publicado 2019

Detection of a SARS-CoV-2 P.1.1 variant lacking N501Y in a vaccinated health care worker in Italy

por Angeletti, Silvia, Giovanetti, Marta, Fogolari, Marta, De Florio, Lucia, Francesconi, Maria, Veralli, Roberta, Antonelli, Francesca, Donati, Daniele, Miccoli, Ginevra Azzurra, Fonseca, Vagner, Benedetti, Francesca, Zella, Davide, Riva, Elisabetta, Ciccozzi, Massimo
Publicado 2022

High Resolution analysis of Transmission Dynamics of Sars-Cov-2 in Two Major Hospital Outbreaks in South Africa Leveraging Intrahost Diversity

por James, San Emmanuel, Ngcapu, Sinaye, Kanzi, Aquillah M, Tegally, Houriiyah, Fonseca, Vagner, Giandhari, Jennifer, Wilkinson, Eduan, Chimukangara, Benjamin, Pillay, Sureshnee, Singh, Lavanya, Fish, Maryam, Gazy, Inbal, Khanyile, Khulekani, Lessells, Richard, de Oliveira, Tulio
Publicado 2020

Global SARS-CoV-2 genomic surveillance: What we have learned (so far)

por Tosta, Stephane, Moreno, Keldenn, Schuab, Gabriel, Fonseca, Vagner, Segovia, Fátima María Cardozo, Kashima, Simone, Elias, Maria Carolina, Sampaio, Sandra Coccuzzo, Ciccozzi, Massimo, Alcantara, Luiz Carlos Junior, Slavov, Svetoslav Nanev, Lourenço, José, Cella, Eleonora, Giovanetti, Marta
Publicado 2023

Betacoronaviruses genome analysis reveals evolution toward specific codons usage: Implications for SARS‐CoV‐2 mitigation strategies

por Lopes, Elisson N., Fonseca, Vagner, Frias, Diego, Tosta, Stephane, Salgado, Álvaro, Assunção Vialle, Ricardo, Paulo Eduardo, Toscano S., Barreto, Fernanda K., Ariston de Azevedo, Vasco, Guarino, Michele, Angeletti, Silvia, Ciccozzi, Massimo, Junior Alcantara, Luiz C., Giovanetti, Marta
Publicado 2021

Technology transfer during the COVID-19 pandemic: report on the first face-to-face practical training course in Brazil

por Barreto, Fernanda Khouri, Santos, Luciane Amorim, Giovanetti, Marta, Fonseca, Vagner, Aburjaile, Flavia, Silva, Joscelio Aguiar, Freitas, Carla, Peterka, Cassio Roberto Leonel, Rico, Jairo Mendez, Almiron, Maria, Melo, Carlos Frederico Campelo de Albuquerque e, Alcântara, Luiz Carlos Júnior
Publicado 2023

Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic

por Pillay, Sureshnee, Giandhari, Jennifer, Tegally, Houriiyah, Wilkinson, Eduan, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Mattison, Stacey, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Khanyile, Khulekani Sedwell, San, James Emmanuel, Fonseca, Vagner, Giovanetti, Marta, Alcantara, Luiz Carlos, de Oliveira, Tulio
Publicado 2020

Genomic Epidemiology and Lineage Dynamics of SARS-CoV-2 in Bulgaria: Insights from a Three-Year Pandemic Analysis

por Giovanetti, Marta, Cella, Eleonora, Ivanov, Ivan, Grigorova, Lyubomira, Stoikov, Ivan, Donchev, Deyan, Dimitrova, Reneta, Slavov, Svetoslav Nanev, Mavian, Carla, Fonseca, Vagner, Scarpa, Fabio, Borsetti, Alessandra, Korsun, Neli, Trifonova, Ivelina, Dobrinov, Veselin, Kantardjiev, Todor, Christova, Iva, Ciccozzi, Massimo, Alexiev, Ivailo
Publicado 2023

Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report

por Giandhari, Jennifer, Pillay, Sureshnee, Wilkinson, Eduan, Tegally, Houriiyah, Sinayskiy, Ilya, Schuld, Maria, Lourenco, Jose, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Khanyile, Khulekani Sedwell, Fonseca, Vagner, Giovanetti, Marta, Alcantara, Luiz Carols, Petruccione, Francesco, de Oliveira, Tulio
Publicado 2020

Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report

por Giandhari, Jennifer, Pillay, Sureshnee, Wilkinson, Eduan, Tegally, Houriiyah, Sinayskiy, Ilya, Schuld, Maria, Lourenço, José, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Sedwell Khanyile, Khulekani, Fonseca, Vagner, Giovanetti, Marta, Carlos Junior Alcantara, Luiz, Petruccione, Francesco, de Oliveira, Tulio
Publicado 2021

Genomic and eco-epidemiological investigations in Uruguay reveal local Chikungunya virus transmission dynamics during its expansion across the Americas in 2023

por Burgueño, Analía, Giovanetti, Marta, Fonseca, Vagner, Morel, Noelia, Lima, Mauricio, Castro, Emerson, Guimarães, Natália R., Iani, Felipe C. M., Bormida, Victoria, Cortinas, Maria Noel, Ramas, Viviana, Coppola, Leticia, Bento, Ana I., Franco, Leticia, Rico, Jairo Mendez, Lourenço, José, Alcantara, Luiz Carlos Junior, Chiparelli, Hector
Publicado 2023

Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa

por San, James E, Ngcapu, Sinaye, Kanzi, Aquillah M, Tegally, Houriiyah, Fonseca, Vagner, Giandhari, Jennifer, Wilkinson, Eduan, Nelson, Chase W, Smidt, Werner, Kiran, Anmol M, Chimukangara, Benjamin, Pillay, Sureshnee, Singh, Lavanya, Fish, Maryam, Gazy, Inbal, Martin, Darren P, Khanyile, Khulekani, Lessells, Richard, de Oliveira, Tulio
Publicado 2021

SARS-CoV-2 epidemic in Brazil: how the displacement of variants has driven distinct epidemic waves

por Alcantara, Luiz Carlos Junior, Nogueira, Elisson, Shuab, Gabriel, Tosta, Stephane, Fristch, Hegger, Pimentel, Victor, Souza-Neto, Jayme A., Coutinho, Luiz Lehmann, Fukumasu, Heidge, Sampaio, Sandra Coccuzzo, Elias, Maria Carolina, Kashima, Simone, Slavov, Svetoslav Nanev, Ciccozzi, Massimo, Cella, Eleonora, Lourenco, José, Fonseca, Vagner, Giovanetti, Marta
Publicado 2022

Genomics-based timely detection of Dengue Virus type I genotypes I and V in Uruguay

por Morel, Noelia, Giovanetti, Marta, Fonseca, Vagner, Burgueño, Analía, Lima, Mauricio, Castro, Emerson, Guimarães, Natália R., Iani, Felipe C. M., Bormida, Victoria, Cortinas, Maria Noel, Ramas, Viviana, Coppola, Leticia, Bento, Ana I., Rosewell, Alexander, Franco, Leticia, Rico, Jairo Mendez, Lourenço, José, Alcantara, Luiz Carlos Junior, Chiparelli, Hector
Publicado 2023